View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_14 (Length: 384)
Name: NF13878_low_14
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_14 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Original strand, 45130916 - 45131290
Alignment:
| Q |
10 |
gcagagactaatatcttttaccatgttgattgtatgaacaggacagtgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaa |
109 |
Q |
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| T |
45130916 |
gcagagactaatatcttttaccatgtcgattgtatcaacgggacaatgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaa |
45131015 |
T |
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| Q |
110 |
gatgttggagttatggtttgtggtccaagaaaattgagacatgaagttgctaaaatttgtgcttctggtttggctgataatcttcactttgagtccatca |
209 |
Q |
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| T |
45131016 |
gatgttggagttatggtttgtggtccaagaaaattgagacatgaagttgctaaaatttgtgcttctggtttggctgataatcttcactttgagtccatca |
45131115 |
T |
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| Q |
210 |
gttttaattggtgacctacaatgttgcatcaatgtacatgtcgtatatatatgccttctaccatctctaaaatgtacgtgttgattcttctatattataa |
309 |
Q |
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| T |
45131116 |
gttttaattggtgacctacaatgttgcatcaatgtacatgtcgtatatatatgccttctaccatctctaaaatgtacgtgttgattcttctatattataa |
45131215 |
T |
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| Q |
310 |
ttaggtaatgtgaagaagtgcaattgcacatgtgtgcttgtacatgaattaatgtctttttcattattaggccat |
384 |
Q |
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| T |
45131216 |
ttaggcaatgtgaagaagtgcaattgcacatgtgtgcttgtacatgaattaatgtctttttcattattaggccat |
45131290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 66 - 364
Target Start/End: Original strand, 45114071 - 45114363
Alignment:
| Q |
66 |
aatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgttggagttatggtttgtggtccaagaaaattgagacatgaagttgctaaaat |
165 |
Q |
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| T |
45114071 |
aatttgttaattttgcagaaattctgtttgagtgtgaaggcaaagatgttggagttatgacttgtggtccaagaaaaatgagacatgaagttgctagaat |
45114170 |
T |
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| Q |
166 |
ttgtgcttctggtttggctgataatcttcactttgagtccatcagttttaattggtgacctacaatgttgcatcaatgtacatgtcgtatatatatgcct |
265 |
Q |
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| T |
45114171 |
atgtgcttctggtttggctgataatcttcacttcgaatcaatcagctttaattggtgatcta-----------caatgtacatgtcgcatatatatgcct |
45114259 |
T |
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| Q |
266 |
tctaccat-ctctaaaatgtacgtgttgattcttcta---tattataattaggtaat-gtgaagaagtgcaattgcacatgtgtgcttgtacatgaatta |
360 |
Q |
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| T |
45114260 |
tttactatcctctaaaacgttcatgttgattcctctatgttattataattaggcaatcgtgaacaagtgcaattgcacaagtgtgcctgtacatgaatta |
45114359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 45122537 - 45122604
Alignment:
| Q |
87 |
ttctgtttgagtgtaaagacaaagatgttggagttatggtttgtggtccaagaaaattgagacatgaa |
154 |
Q |
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| T |
45122537 |
ttctttttgagtgtgaaggcaaagatgttgaagttatggtttgttgtccaagataattgagacatgaa |
45122604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 45131291 - 45131319
Alignment:
| Q |
318 |
tgtgaagaagtgcaattgcacatgtgtgc |
346 |
Q |
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| T |
45131291 |
tgtgaagaagtgcaattgcacatgtgtgc |
45131319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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