View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_17 (Length: 365)
Name: NF13878_low_17
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 9e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 110 - 295
Target Start/End: Original strand, 44449186 - 44449371
Alignment:
| Q |
110 |
tcgggtgagtttatcttttgattcttataaataaagacttatgagagagtctcacaagtaccggtcaaagatgtaaaaattcaagtgcgagtaattaagt |
209 |
Q |
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| T |
44449186 |
tcgggtgagttcatcttttgattcttataaataaagacttatgagagagtctcacaagtaccggtcaaagatgtaaaaattcaaatgcgagtaattaaat |
44449285 |
T |
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| Q |
210 |
ttcacatcaataaaaaggagaaaaacttgagtatacaagaaatgtgatatatgtgatgcttaaaggattttagtaaaagatatgat |
295 |
Q |
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| T |
44449286 |
ttcacatcaatagaaaggagaaaaacttgagtatacaagaaatgtgatatatgtgatgcttaaaggattttagtaaatgatatgat |
44449371 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 44449060 - 44449128
Alignment:
| Q |
20 |
gctagttcaactata--tataatcaaagttttcaattctcaacatgataaaaactaaccatatactcaa |
86 |
Q |
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| T |
44449060 |
gctagttcaactatatatataatcaaaattttcaattctcaacatgataaaaactaaccatatactcaa |
44449128 |
T |
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