View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_20 (Length: 331)
Name: NF13878_low_20
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 43180139 - 43180444
Alignment:
| Q |
9 |
acatcatcacctcctacacctccctctccactccccattagttatggagctggaaatagtagatactctttctcatcttcttcaacttcatcttcacctt |
108 |
Q |
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| T |
43180139 |
acatcatcacctcctacacctccctctccactccccattagttatggagctggaaatagtagatactctttctcatcttcttcaacttcatcttcacctt |
43180238 |
T |
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| Q |
109 |
tctccactccaacttctgctgaaaatctcccccttctgcatctacacaagacatttaattcagcagtattttcagttgatcgcgaagatccttcagaata |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43180239 |
tctccactccaacttctgctgaaaatctcccccttctgcatctacacaagacatttaattcagcagtattttcagttgatcgcaaagatccttcagaata |
43180338 |
T |
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| Q |
209 |
tgaatccaagagtacatgcctcaaagacttgtaagtctcaaatctcaatctcttttctttaattacttccatttcatggcatgggaagtcttaggtgaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43180339 |
tgaatccaagagtacatgcctcaaagacttgtaagtctcaaatctcaatctcttttctttaattacttccatttcatggcatgggaagtcttaggtgaca |
43180438 |
T |
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| Q |
309 |
agttta |
314 |
Q |
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|||||| |
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| T |
43180439 |
agttta |
43180444 |
T |
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