View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13878_low_21 (Length: 314)

Name: NF13878_low_21
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13878_low_21
NF13878_low_21
[»] chr4 (13 HSPs)
chr4 (20-226)||(9138261-9138467)
chr4 (20-221)||(8035668-8035869)
chr4 (89-213)||(8041090-8041214)
chr4 (80-221)||(8411375-8411522)
chr4 (224-309)||(8418969-8419052)
chr4 (91-225)||(43144135-43144272)
chr4 (34-137)||(8404284-8404387)
chr4 (20-213)||(8358837-8359033)
chr4 (126-226)||(8418857-8418947)
chr4 (20-213)||(8416917-8417119)
chr4 (163-224)||(8404434-8404495)
chr4 (226-258)||(8411551-8411583)
chr4 (164-213)||(9576711-9576762)
[»] chr2 (3 HSPs)
chr2 (19-225)||(33084466-33084672)
chr2 (224-284)||(33084695-33084753)
chr2 (166-213)||(24845660-24845707)
[»] chr7 (2 HSPs)
chr7 (160-224)||(5476994-5477058)
chr7 (34-137)||(5476844-5476947)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 9138467 - 9138261
Alignment:
Q  20 ctgaacaatattcactttctactacaaatcttatttcttttactatcacgcaatgtcctatttttcaaaaactcttatcctccatatgcaatctttctta 119  Q
    |||| ||||||||||||||| || ||||||||| |||||||||||||    | |||||||||||||| |||  ||||||||||| ||||||||||||||     
T  9138467 ctgaccaatattcactttctgctccaaatcttagttcttttactatcgatgattgtcctatttttcagaaatccttatcctccacatgcaatctttcttt 9138368  T
Q  120 tcttcaacaagtaaatatgtatggctgtcccaataaaggggaagcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttggaattt 219  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  9138367 tcttcaacaagtaaatatgtatggcttttccaataacggggaagcttcaatcttcttaagatggctgcaagtgcttgccaatgtcaagattttggaattt 9138268  T
Q  220 ggttatg 226  Q
    |||||||    
T  9138267 ggttatg 9138261  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 8035869 - 8035668
Alignment:
Q  20 ctgaacaatattcactttctactacaaatcttatttcttttactatcacgcaatgtcctatttttcaaaaactcttatcctccatatgcaatctttctta 119  Q
    ||||||||||||| ||||||||| |||  |||| |||||||||||||  ||| |||||||||||||| |||||||||||||||| ||||||||||||||     
T  8035869 ctgaacaatattcgctttctactccaaggcttagttcttttactatcgggcattgtcctatttttcagaaactcttatcctccacatgcaatctttcttt 8035770  T
Q  120 tcttcaacaagtaaatatgtatggctgtcccaataaaggggaagcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttggaattt 219  Q
    ||||||||||||||||||||||| || | ||||||| | ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| |||||    
T  8035769 tcttcaacaagtaaatatgtatgacttttccaataatgcggaagctttgatcttcttaaattggctgcaagtgcttgccaatgtaaagattttgaaattt 8035670  T
Q  220 gg 221  Q
    ||    
T  8035669 gg 8035668  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 8041214 - 8041090
Alignment:
Q  89 aactcttatcctccatatgcaatctttcttatcttcaacaagtaaatatgtatggctgtcccaataaaggggaagcttcaatcttcttaagatggctgca 188  Q
    |||||||  |||||| |||||||||||||| |||||||||||||||||||||||||  | ||||||| | ||||||||||||||||||||||||||||||    
T  8041214 aactcttggcctccacatgcaatctttcttttcttcaacaagtaaatatgtatggcatttccaataacgtggaagcttcaatcttcttaagatggctgca 8041115  T
Q  189 agtgcttgccaacgtaaagattttg 213  Q
    |||||| ||||| ||||||||||||    
T  8041114 agtgctggccaatgtaaagattttg 8041090  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 8411375 - 8411522
Alignment:
Q  80 tttttcaaaaactcttatcctccatatgcaatctttcttatcttcaacaagtaaatatgtatggctgtcccaataa--agg----ggaagcttcaatctt 173  Q
    |||||||  |||||||  |||||| |||||||||||||| |||||||||||||||||||||||||| | ||  |||  |||    |||||||||||||||    
T  8411375 tttttcatcaactcttggcctccacatgcaatctttcttttcttcaacaagtaaatatgtatggcttttcctgtaacgaggacgaggaagcttcaatctt 8411474  T
Q  174 cttaagatggctgcaagtgcttgccaacgtaaagattttggaatttgg 221  Q
    | ||||||||||||||||||||||||| |||||||||||| |||||||    
T  8411475 cgtaagatggctgcaagtgcttgccaatgtaaagattttgaaatttgg 8411522  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 8418969 - 8419052
Alignment:
Q  224 atgtaagtgactttagtgtactttcacatatatatattttgattacacaatcatttgggtctttaaatacgtttgcctatgctact 309  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||| ||| ||||    
T  8418969 atgtaagtgactttagtgtactttcacatat--atattttgattacacaatcattttagtctttaaatacgtttgccgatgttact 8419052  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 43144272 - 43144135
Alignment:
Q  91 ctcttatcctccatatgcaatctttcttatcttcaacaagtaaatatgtatggc-tgtcc--caataaaggggaagcttcaatcttcttaagatggctgc 187  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||||  ||||| | |||  ||   |   ||||||||||| |||||||||||||||||    
T  43144272 ctcttatcctcaacatgcaatctttcttttcttcaacaagtaaatattgatggcctctcctacatccacaaggaagcttcaaccttcttaagatggctgc 43144173  T
Q  188 aagtgcttgccaacgtaaagattttggaatttggttat 225  Q
    |||||||||||||||||||||||||| || ||||||||    
T  43144172 aagtgcttgccaacgtaaagattttgaaaattggttat 43144135  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 8404284 - 8404387
Alignment:
Q  34 ctttctactacaaatcttatttcttttactatcacgcaatgtcctatttttcaaaaactcttatcctccatatgcaatctttcttatcttcaacaagtaa 133  Q
    ||||||||| ||||||||| |||||||||||||  | ||  |||||||||| | |||||||||||||||| | |||||||||||| ||||||||||||||    
T  8404284 ctttctactccaaatcttagttcttttactatctggaaaattcctatttttaagaaactcttatcctccacaagcaatctttcttttcttcaacaagtaa 8404383  T
Q  134 atat 137  Q
    ||||    
T  8404384 atat 8404387  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 8359033 - 8358837
Alignment:
Q  20 ctgaacaatattcactttctactacaaatcttatttcttttactatcacgcaatgtcctatttttcaaaaactcttatcctccatatgcaatctttctta 119  Q
    |||| |||| ||| ||||||||| ||||||||| || |||||||||| || | ||| |||||||||   ||||||||||||||| ||| ||||||||||     
T  8359033 ctgaccaattttcgctttctactccaaatcttagtttttttactatctcggagtgtgctatttttcggcaactcttatcctccacatgtaatctttcttt 8358934  T
Q  120 tcttcaacaagtaaatatgtatggctgtccc---aataaaggggaagcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttg 213  Q
    ||||||||||||||||||  ||  ||   ||     | | ||| |||||||||||||||||| ||||||||||||||||||||| ||  ||||||||    
T  8358933 tcttcaacaagtaaatattgattacttctccggtggtgacgggaaagcttcaatcttcttaaaatggctgcaagtgcttgccaatgtcgagattttg 8358837  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 8418857 - 8418947
Alignment:
Q  126 acaagtaaatatgtatggctgtcccaataaaggggaagcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttggaatttggttat 225  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||          |||||||||||||||||||||||||||||||    
T  8418857 acaagcaaatatgtatggctgtcccaataaaggggaagcttcaatcttcgtaaaatggc----------tgccaacgtaaagattttggaatttggttat 8418946  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 8416917 - 8417119
Alignment:
Q  20 ctgaacaatattcactttctactacaaatcttatttcttttactatcacgcaatgtcctatttttcaaaaactcttatcctccatatgcaatctttctta 119  Q
    |||| |||| ||| ||||||||| ||||||||| ||||||||||||||      || || |||||||  ||| |||  |||||| ||||||||||||||     
T  8416917 ctgaccaattttcgctttctactccaaatcttagttcttttactatcaaaggtagttctctttttcatcaacccttggcctccacatgcaatctttcttt 8417016  T
Q  120 tcttcaacaagtaaat---------atgtatggctgtcccaataaaggggaagcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagatt 210  Q
    |||||||||||||| |         ||| |||||| |  || ||  |||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  8417017 tcttcaacaagtaacttttactggtatggatggctatttcactatcggggaagcttcaatcttcttaagatggctgcaagtgtttgccaatgtaaagatt 8417116  T
Q  211 ttg 213  Q
    |||    
T  8417117 ttg 8417119  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 8404434 - 8404495
Alignment:
Q  163 gcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttggaatttggtta 224  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||| || |||||||    
T  8404434 gcttcagtcttcttaagttggcttcaagtgcttgccaacgtaaagattttgaaaattggtta 8404495  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 8411551 - 8411583
Alignment:
Q  226 gtaagtgactttagtgtactttcacatatatat 258  Q
    ||||||||||||||||||||||||||| |||||    
T  8411551 gtaagtgactttagtgtactttcacatctatat 8411583  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 9576762 - 9576711
Alignment:
Q  164 cttcaatcttcttaagat--ggctgcaagtgcttgccaacgtaaagattttg 213  Q
    |||||||||||||| |||  ||||||||||||||||||| || |||||||||    
T  9576762 cttcaatcttcttaggatatggctgcaagtgcttgccaatgtcaagattttg 9576711  T

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Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 33084466 - 33084672
Alignment:
Q  19 actgaacaatattcactttctactacaaatcttatttcttttactatcacgcaatgtcctatttttcaaaaactcttatcctccatatgcaatctttctt 118  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||| | | |||||||||||||| |||  ||||||||||| ||||||||||||||    
T  33084466 actgaccaatattcactttctactccaaatcttagttcttttactatcagggattgtcctatttttcagaaatccttatcctccacatgcaatctttctt 33084565  T
Q  119 atcttcaacaagtaaatatgtatggctgtcccaataaaggggaagcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttggaatt 218  Q
     ||||||||||||||||||||| |||| | ||||| | || ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  33084566 ttcttcaacaagtaaatatgtacggcttttccaatgacggagaagcttcaatcttcctaagatggctgcaagtgctttccaatgtaaagattttggaatt 33084665  T
Q  219 tggttat 225  Q
    |||||||    
T  33084666 tggttat 33084672  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 33084695 - 33084753
Alignment:
Q  224 atgtaagtgactttagtgtactttcacatatatatattttgattacacaatcatttgggtc 284  Q
    ||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||||||    
T  33084695 atgtaagtgactttagtgtactttcgcatctata--ttttgattacacaatcatttgggtc 33084753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 24845660 - 24845707
Alignment:
Q  166 tcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttg 213  Q
    ||||||||||||| |||||||||||||||| |||| || |||||||||    
T  24845660 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttg 24845707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 5476994 - 5477058
Alignment:
Q  160 gaagcttcaatcttcttaagatggctgcaagtgcttgccaacgtaaagattttggaatttggtta 224  Q
    ||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||| || |||||||    
T  5476994 gaagcttcagtcttcttaagttggcttcaagtgcttgcgaacgtaaagattttgaaaattggtta 5477058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 5476844 - 5476947
Alignment:
Q  34 ctttctactacaaatcttatttcttttactatcacgcaatgtcctatttttcaaaaactcttatcctccatatgcaatctttcttatcttcaacaagtaa 133  Q
    ||||||||| ||||||||  ||| |||||||||  | |  ||| ||||||| || || |||| ||||| | |||||||||||| | ||||||||||||||    
T  5476844 ctttctactccaaatctttgttcgtttactatcttgaacagtcttatttttgaacaagtcttgtcctcaacatgcaatctttcctttcttcaacaagtaa 5476943  T
Q  134 atat 137  Q
    ||||    
T  5476944 atat 5476947  T

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