View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_25 (Length: 275)
Name: NF13878_low_25
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 47804539 - 47804778
Alignment:
| Q |
17 |
aatatcaagcttatctacctaaaacaaagcttggtgaacgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagcca |
116 |
Q |
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| T |
47804539 |
aatatcaagcttatctacctaaaacaaagcttggtgatcgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagcca |
47804638 |
T |
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| Q |
117 |
gagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgcta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804639 |
gagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgcta |
47804738 |
T |
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| Q |
217 |
ctttatatttctcaatatttggttctatgtatgtacttta |
256 |
Q |
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| T |
47804739 |
ctttatatttctcaatatttggttctatgtatgtacttta |
47804778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 47807101 - 47807340
Alignment:
| Q |
17 |
aatatcaagcttatctacctaaaacaaagcttggtgaacgagttatcgaaacaacctgaaagctttgcgagtagggtggttggaacttttgttagagcca |
116 |
Q |
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||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47807101 |
aatatcaagcttatctacctaaagcgaagcttggtattcgagttatcgaaacagcctgaaagctttgcgagtagggtgattggaacttttgttagagcca |
47807200 |
T |
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| Q |
117 |
gagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgcta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47807201 |
gagtagattccaatgatcataagctaaggaattcataccatcttgtgagagtcataggtataataaattgcatatagatcttgctagctttttaacgcta |
47807300 |
T |
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| Q |
217 |
ctttatatttctcaatatttggttctatgtatgtacttta |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
47807301 |
ctttatatttctcaatatttggttctatgtatgtacttta |
47807340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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