View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_28 (Length: 264)
Name: NF13878_low_28
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 43365284 - 43365034
Alignment:
| Q |
1 |
acatttaattgcattacacaggttgttcggctcacgaagtttgactacagactttctaatctgctggatgatgatctacaaaagctgaggtgcagggtaa |
100 |
Q |
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| T |
43365284 |
acatttaattgcattacacaggttgttcggctcacgaagtttgactacagactttctaatctgctggatgatgatctacaaaagctgaggtgcagggtaa |
43365185 |
T |
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| Q |
101 |
actaccatgctctcaaatttacggattcgattcagggaatgggaaatttgttgattgagcggatgagaatgaaaagcaagcgtttcatcgcactacattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43365184 |
actaccatgctctcaaatttacggattcgattcagggaatgggaaatttgttggttgagcggatgagaatgaaaagcaagcgtttcatcgcgctacattt |
43365085 |
T |
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| Q |
201 |
aaggtaagattccatttgataattatagctcaatatttgtccctggttcct |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43365084 |
aaggtaagattccatttgataattatagctcaatatttgtccctggttcct |
43365034 |
T |
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