View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_34 (Length: 230)
Name: NF13878_low_34
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 24202447 - 24202667
Alignment:
| Q |
7 |
cttacaatattaaatgtttcagggataaaaaagatatcaaagttgagtttcgtgtgatgaattcaactttaactaaagaaatgggcatgatgaaagcaca |
106 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |||||| | ||||| |
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| T |
24202447 |
cttacaatattaaatgtttcagggacaaaa--gatatcaaagttgagtttcgtgttatggcttcaactttatctaaagaaatgggaatgatggatgcaca |
24202544 |
T |
|
| Q |
107 |
gttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaag |
206 |
Q |
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||||||||||||| |||||||| | |||||||| ||||| ||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
24202545 |
gttgaagcgatgagaagatgcagcacttgaagccgtatccttgcgtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaag |
24202644 |
T |
|
| Q |
207 |
ttccctttcattttctttctcac |
229 |
Q |
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|||||||||||||||||| |||| |
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| T |
24202645 |
ttccctttcattttctttgtcac |
24202667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 36668617 - 36668397
Alignment:
| Q |
7 |
cttacaatattaaatgtttcagggataaaaaagatatcaaagttgagtttcgtgtgatgaattcaactttaactaaagaaatgggcatgatgaaagcaca |
106 |
Q |
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||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||| |||| | ||| ||||||||||||| |||||| || |||| |
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| T |
36668617 |
cttacaatattaaatgtttcagggagaaaa--gatatcaaagctgagtttggtgtgatgtcttcagccttatctaaagaaatggggatgatggaaacaca |
36668520 |
T |
|
| Q |
107 |
gttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaag |
206 |
Q |
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| T |
36668519 |
gttgaagcgatggaaagatgcagctcatgaagctgtatcattgcgtgcgaaagcacattcgctaagagagaaattgagtgggaaggttattcacacaaac |
36668420 |
T |
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| Q |
207 |
ttccctttcattttctttctcac |
229 |
Q |
| |
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| || |||||||||||||||||| |
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| T |
36668419 |
tgccatttcattttctttctcac |
36668397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 27561744 - 27561526
Alignment:
| Q |
7 |
cttacaatattaaatgtttcagggataaaaaagatatcaaagttgagtttcgtgtgatgaattcaactttaactaaagaaatgggcatgatgaaagcaca |
106 |
Q |
| |
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|||||||||||||| |||| ||||| ||| |||||||||| ||||||||||||||| |||| ||||| ||||||||||||| |||||| || |||| |
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| T |
27561744 |
cttacaatattaaacgttttagggagaaat--gatatcaaagctgagtttcgtgtgatatcttcagctttatctaaagaaatggggatgatggaaacaca |
27561647 |
T |
|
| Q |
107 |
gttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaag |
206 |
Q |
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||||||||||| ||||||||| ||||| |||||||| ||||| ||||||||||||||||| | || | ||||||||||| ||||||||||||||||| |
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| T |
27561646 |
gttgaagcgatcgaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattcattcag--cgaaattgagtgggaaggttattcacacaaac |
27561549 |
T |
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| Q |
207 |
ttccctttcattttctttctcac |
229 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
27561548 |
ttccctttcattttctttctcac |
27561526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 36672831 - 36672910
Alignment:
| Q |
105 |
cagttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagcacattcactaagacccaaattgag |
184 |
Q |
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||||||||| |||| ||||||| | ||||||||| |||||||||||||||||||||| || ||||||| | |||||||| |
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| T |
36672831 |
cagttgaagtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagcagttttactaagagcgaaattgag |
36672910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 29411149 - 29410931
Alignment:
| Q |
7 |
cttacaatattaaatgtttcagggataaaaaagatatcaaagttgagtttcgtgtgatgaattcaactttaactaaagaaatgggcatgatgaaagcaca |
106 |
Q |
| |
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|||||| | |||||| ||||||||| |||| || ||||||| ||||||||||||||| |||| ||||| ||||||||||||| |||||| | || || |
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| T |
29411149 |
cttacactgttaaatttttcagggagaaaa--gacatcaaagccgagtttcgtgtgatggcttcagctttatctaaagaaatggggatgatggacgcgca |
29411052 |
T |
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| Q |
107 |
gttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaag |
206 |
Q |
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| T |
29411051 |
ggtgaagcgatggaaagatgcagctcttgaagctgtatcattacgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaag |
29410952 |
T |
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| Q |
207 |
ttccctttcattttctttctc |
227 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
29410951 |
taccctttcattttctttctc |
29410931 |
T |
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