View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_37 (Length: 215)
Name: NF13878_low_37
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_37 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 7089542 - 7089757
Alignment:
| Q |
1 |
ttgtataataaataacagaatgtttgtgtatttattcgattattttatgacattttgttaatatataacaataacaattgtgactgaaacaatgtttaaa |
100 |
Q |
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| T |
7089542 |
ttgtataataaataacagaatgtttgtgtatttattcgattattttatgacattttgttaatatataacaataacaattgtgaccgaaacaatgtttaaa |
7089641 |
T |
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| Q |
101 |
aaattggatcggaaattgaaccgattagagttttgacttatcatttaatttgttcaattagttcaaccacggttaacttgacaaataaatggataaaaag |
200 |
Q |
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| T |
7089642 |
aaattggatcgaaaattgaaccgattagagttttgacttatcatttaatttgttcaattagttcaaccatagttaacttgacaaataaatggataaaaag |
7089741 |
T |
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| Q |
201 |
gt-aagaaaatattaa |
215 |
Q |
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| T |
7089742 |
gtaaagaaaatattaa |
7089757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 7091347 - 7091304
Alignment:
| Q |
30 |
atttattcgattattttatgacattttgttaatatataacaata |
73 |
Q |
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| T |
7091347 |
atttattctattattttatgacactttgttaatatataacaata |
7091304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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