View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_4 (Length: 565)
Name: NF13878_low_4
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Complemental strand, 29064026 - 29063487
Alignment:
| Q |
13 |
aagaatatgacagagagaaagagaattaataagaggaaaaaa-ttcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
111 |
Q |
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| T |
29064026 |
aagaatatgacagagagacagagaattaataagaggaaaaaaattcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaac |
29063927 |
T |
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| Q |
112 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtctcnnnnnnn-ctttctacttttacagggaattttctacactcactcac--acta |
208 |
Q |
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| T |
29063926 |
ataaaaactccattaaaatgcaacagcatttcaaaggaaaaatgtcttttttttttctttctacttttacagggaattttctacactcactcactcacta |
29063827 |
T |
|
| Q |
209 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttaccccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
308 |
Q |
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| T |
29063826 |
tgttgctggaaagtgttactctttatcaccacaaacttcaacttttacaccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaa |
29063727 |
T |
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| Q |
309 |
tgttgttgagactgtttacaatgtgcaatagctccttcaactgaaccttccacctcataattagcactaatactcctcttaaacaattgtaaatcataat |
408 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29063726 |
tgttgctgagactgtttacaatgtgcaatagctccttcaactgaaccttccacctcataattagcactaatactcctcttaaacaattgtaaatcataat |
29063627 |
T |
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| Q |
409 |
tacccgatgaactaaacgaaaaagacgaagaatttgaagatgacccggatgaagatgttgataaagatgaaaccttgttgctaccacaatgtctttgaac |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29063626 |
tacccgatgaactaaacgaaaaagacgaagaatttgaagatgacccggatgaagatgttgacaaagatgaaaccttgttgctaccacaatgtctttgaac |
29063527 |
T |
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| Q |
509 |
cactccagagaaagatttcctatggttgacaaaatcatct |
548 |
Q |
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| T |
29063526 |
cactccagagaaagatttcctatggttgacaaaatcatct |
29063487 |
T |
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