View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_6 (Length: 511)
Name: NF13878_low_6
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 493
Target Start/End: Complemental strand, 2984641 - 2984156
Alignment:
| Q |
8 |
tgaaatgaacaaaaccatgtaagacaatctgataaacgctg---aatcagaattgtgacagtgaggctagcttgattaatcaactatgatgcatgttgaa |
104 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2984641 |
tgaagtgaacaaaaccatgtaagacaatctgatatacgctgctgaatcagagttgtgacagtgaggctagcttgattaatcaactatgatgcatgttgaa |
2984542 |
T |
|
| Q |
105 |
tcagtgcaaaccatctgatatacttactgatccagagtaaaaacaggtggactagggtcttatagttcctttaaagaacaatgatagttgaatttggctt |
204 |
Q |
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| T |
2984541 |
tcagtgcaaaccatctgatatacttactgatccagagtaaaaacaggtggactagggtcttatagttcctttaaagaacaatgatagttgaatttggctt |
2984442 |
T |
|
| Q |
205 |
cactctctgaattgtttgcataaaaatttcgacaagatactaagaaatttgtggacaaaatgatcatttttataacatgtttcaatgacatggccaaatt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2984441 |
cactctctgaattgtttgcataaaaatttcgacaagatactaagaaatttgtggataaaatgatcatttttataacatgtttcaatgacatggccaaatt |
2984342 |
T |
|
| Q |
305 |
ttacaaaatatgtacacactttatatctactccttcttcatacatgttttgtcatgtctaaacatgcacatggtattggacacatacattgttgaattga |
404 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2984341 |
ttacaaaatatgtacacactttatatctactc---cttcatacatgtcttgtcatgtctaaacatgcacatggtattggacacatacattgttgaattga |
2984245 |
T |
|
| Q |
405 |
cctgatgtttctaattcttcccacaaggctttgaattctgtaactttttcaataacagtcacaacacacaattcttgctacaactcaac |
493 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2984244 |
cctgatgtttctaattcttcccacaagactttgaattctgtaactttttcaataacagtcacaacacacaattcttgctacaactcaac |
2984156 |
T |
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