View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_7 (Length: 487)
Name: NF13878_low_7
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 4 - 487
Target Start/End: Original strand, 47804074 - 47804557
Alignment:
| Q |
4 |
aatattgaagaatatacaggtgtgcataagctgaagaaacagaatcggtatagttcaatggaatttgttggatgggcatcaagacctctatctagcttcc |
103 |
Q |
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| T |
47804074 |
aatattgaagaatatacaggtgtgcataagctgaagaaacagaatcggtatagttcaatggaatttgtcggatgggcatcaagacctctatctagcttcc |
47804173 |
T |
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| Q |
104 |
ttgcatccatagggagatacaataccgaaccaatgatgcaatggggaataagatctctcatatatgaatacattaaggagaaaaatctttaccatcccaa |
203 |
Q |
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| T |
47804174 |
ttgcatccatagggagatacaaaaccgaaccaatgatgcaatggggaataagatctctcatatatgaatacattaaggagaaaaatctttaccatcccaa |
47804273 |
T |
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| Q |
204 |
agacaagaggaaattcctccctgatgacaagttgtttcctatatttaaaaagaaagctgtgttgaagtctcagatatattctctcctcgagtttcacatt |
303 |
Q |
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| T |
47804274 |
agacaagaggaaattcctccctgatgacaagttgtttcctatatttaaaaagaaagctgtgttgaagtctcagatatattctctactcgagtttcacatt |
47804373 |
T |
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| Q |
304 |
gcgaaaaattcagatgattcatctggaaaggaaaatcacgatgnnnnnnnnnnttgttcggcagacaaggatatcgatgatcagacaagtctggaaagcc |
403 |
Q |
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| T |
47804374 |
gcgaaaaattcagatgattcatctagaaaggaaaatcacgatgaaaaaaaaaattgttcggcagacaaggatatcgatgatcagacatgtctggaaagcc |
47804473 |
T |
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| Q |
404 |
ggttgtccaacttggatgttttgcatccattaaaacctggatgttttgcatccattaatgccaataatatcaagcttatctacc |
487 |
Q |
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| T |
47804474 |
ggttgtccaacttggatgttttgcatccattaaaacctggatgttttgcatccattaatgccaataatatcaagcttatctacc |
47804557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 47806634 - 47806958
Alignment:
| Q |
20 |
caggtgtgcataagctgaagaaacagaatcggtatagttcaatggaatttgttggatgggcatcaagacctctatctagcttccttgcatccatagggag |
119 |
Q |
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| T |
47806634 |
caggtatgcataagccgaacaaacggaagcgctatagttcaggggaattcgttggatgggcatcaggacctctctctagtttcctggcatccatagggag |
47806733 |
T |
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| Q |
120 |
atacaataccgaaccaatgatgcaatggggaataagatctctcatatatgaatacattaaggagaaaaatctttaccatcccaaagacaagaggaaattc |
219 |
Q |
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| T |
47806734 |
atatgaaaccgaaccaatgatgcgaagggatgtaaaatctctcatgtttgaatacattacagagaaaaatctttatcatcataaagacaagaaaaaattc |
47806833 |
T |
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| Q |
220 |
ctccctgatgacaagttgtttcctatatttaaaaagaaagctgtgttgaagtctcagatatattctctcctcgagtttcacattgcgaaaaattcagatg |
319 |
Q |
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| T |
47806834 |
ttccctgacgataagttgtttccaatctttaaaaagaaagtcatgtcaaagtacaagatatatcccctactcaagtttcatattgcggaaagatctgttg |
47806933 |
T |
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| Q |
320 |
attcatctggaaaggaaaatcacga |
344 |
Q |
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| T |
47806934 |
attcggctggaaaggaaaatcacga |
47806958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 434 - 487
Target Start/End: Original strand, 47807066 - 47807119
Alignment:
| Q |
434 |
taaaacctggatgttttgcatccattaatgccaataatatcaagcttatctacc |
487 |
Q |
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| T |
47807066 |
taaaacctggatgttttgcatcgattaatgccaaaaatatcaagcttatctacc |
47807119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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