View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13878_low_8 (Length: 445)
Name: NF13878_low_8
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 201 - 429
Target Start/End: Complemental strand, 17227476 - 17227248
Alignment:
| Q |
201 |
attaataacacccatagcccacttctttctcccatgcacttgtcctcttcatttcaacttcaacccactcctcttcactct-ttctccaaatttaatttt |
299 |
Q |
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| T |
17227476 |
attaataacacccatagcccacttctttctcccatgcacttgtcctcttcatt-caacttcaacccactcctcttcactctcttcgccaaatttaatttt |
17227378 |
T |
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| Q |
300 |
attatcataccttagcaacattacaaaaaacatataaccacttttatttatttctctcttaataaatactattcccttactctccatactcatttcacat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17227377 |
attatcataccttagcaacattacaaaaaacatataaccacttttatttatttctctcttaataaatactattcccttactctccatactcatttcacat |
17227278 |
T |
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| Q |
400 |
aacttctcttcactttcttcccttctttct |
429 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17227277 |
aacttctcttcactttcttcccttctttct |
17227248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 17227665 - 17227515
Alignment:
| Q |
4 |
agtagtagtagtaagataacatggggttgcgtggtgtgactgacacaaagaggtcccacatcgtaggccgataaacaagcacaattttcttaagccactt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17227665 |
agtagtagtagtaagataacatggggttgcgtggtgtgactgacacaaagaggtcccacatcgtaggccgataaacaagcacaattttcttaagccactt |
17227566 |
T |
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| Q |
104 |
gaacactaaccccagttaggggacacattcagaaaggacagtatggcctaa |
154 |
Q |
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| T |
17227565 |
gaacactaaccccagttaggggacacattcagaaaggacagtatggcctaa |
17227515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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