View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13878_low_9 (Length: 439)
Name: NF13878_low_9
Description: NF13878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13878_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 44849393 - 44848970
Alignment:
| Q |
1 |
agatcttttggtgtttttgaatcttcatagtgatggtcatcctctttctctatttccttgtcctcatcctcttgtttctattgccttacccatttaaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849393 |
agatcttttggtgtttttgaatcttcatagtgatggtcatcctctttctctatttccttgtcctcatcctcttgtttctattgccttacccatttaaggc |
44849294 |
T |
|
| Q |
101 |
gaggactacttaaatcttatatctctaattaatgcggactctcaatacaccttaaacactcaagaatagacaactagaaagtagtttaaagcatgtatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849293 |
gaggactacttaaatcttatatctctaattaatgcggactctcaatacaccttaaacactcaagaatagacaactagaaagtagtttaaagcatgtatct |
44849194 |
T |
|
| Q |
201 |
caaacaaacatgtttgacatgagacttgagggtctctgtcagtcgtatttggttgctggtctatctataaatgattttgttggaaatttgggaagtaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849193 |
caaacaaacatgtttgacatgagacttgagggtctctgtcagtcgtatttggttgctggtctatctataaatgattttgttggaaatttgggaagtaatt |
44849094 |
T |
|
| Q |
301 |
ttatgtggaatatgggaagactgaagatcattgttctatcttgatttccttcttttctattaaagaaaaggagtcccatttaatttattgagagtgcctg |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44849093 |
ttatgtggaatatgtgaagactgaagatcattgttctatcttgatttccttcttttctattaaagaaaaggagtcccatttaatttattgagagtgcctg |
44848994 |
T |
|
| Q |
401 |
tcagtcgtattttgggattgtacc |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44848993 |
tcagtcgtattttgggattgtacc |
44848970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University