View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13879_high_11 (Length: 243)
Name: NF13879_high_11
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 55825440 - 55825224
Alignment:
| Q |
9 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825440 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
55825341 |
T |
|
| Q |
109 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825340 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
55825241 |
T |
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| Q |
209 |
aaaagaaagaggcagtt |
225 |
Q |
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||||||||||||||||| |
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| T |
55825240 |
aaaagaaagaggcagtt |
55825224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 56149541 - 56149757
Alignment:
| Q |
9 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149541 |
agcagagaaaaagctagaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaa |
56149640 |
T |
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| Q |
109 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149641 |
agtagactctcgatttcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcag |
56149740 |
T |
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| Q |
209 |
aaaagaaagaggcagtt |
225 |
Q |
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||||||||||||||||| |
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| T |
56149741 |
aaaagaaagaggcagtt |
56149757 |
T |
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Back To:
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