View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13879_high_12 (Length: 242)
Name: NF13879_high_12
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 19577553 - 19577342
Alignment:
| Q |
20 |
ggttaaccaattgttattttaacttgtaacttaaatatgctgaacgttgaagttagatgcaatattttaaaaaacgatccggccagtttgctgggaaccc |
119 |
Q |
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| T |
19577553 |
ggttaaccaattgttattttaacttgtaacttaaatatgttgaacgttgaagttagatgcaatattttaaaaaacgatccggccagtttaccgggaaccc |
19577454 |
T |
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| Q |
120 |
tagtctggtttgattcagtcatgtcaagtgaacccaagggcgtatctgaactctcaatatcggtgaggcataattttttgtcaaataattaaataaaacg |
219 |
Q |
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| T |
19577453 |
tagtctggtttgattcggtcatgtcaagtgaacccaagggcgtatctggactctcaatatcggtgaggcataattttttgtcaaataattaaataaaacg |
19577354 |
T |
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| Q |
220 |
tacacaggttct |
231 |
Q |
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|||||| ||||| |
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| T |
19577353 |
tacacatgttct |
19577342 |
T |
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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30710605 - 30710653
Alignment:
| Q |
175 |
aatatcggtgaggcataattttttgtcaaataattaaataaaacgtaca |
223 |
Q |
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| T |
30710605 |
aatatcggtgaggcataatttcttgtcaaataattaaataaaacgtaca |
30710653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 8064304 - 8064369
Alignment:
| Q |
154 |
caagggcgtatctgaactctcaatatcggtgaggcataa-ttttttgtcaaataattaaataaaac |
218 |
Q |
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| T |
8064304 |
caagggcggatctggactcaaaatatcgatgaggcacaaattttttgtcaaataattaaataaaac |
8064369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 17304305 - 17304349
Alignment:
| Q |
175 |
aatatcggtgaggcataat-tttttgtcaaataattaaataaaac |
218 |
Q |
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| T |
17304305 |
aatatcggtgaggcacaatgtttttgtcaaataattaaataaaac |
17304349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 7138208 - 7138280
Alignment:
| Q |
157 |
gggcgtatctgaactctcaatatcggtgaggcataatttttt----gtcaaataattaaataaaacgtacaca |
225 |
Q |
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| T |
7138208 |
gggcggatctgaactcaaaatattggtgaggcacaattttttcgcggtcaaataattaaataaaacgtacaca |
7138280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 5090615 - 5090673
Alignment:
| Q |
163 |
atctgaactctcaatatcggtgaggcataattttttgtcaaataattaaataaaacgta |
221 |
Q |
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| T |
5090615 |
atctggactcacaatattggtgaggcacaattttatgtcaaataatcaaataaaacgta |
5090673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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