View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13879_high_13 (Length: 237)
Name: NF13879_high_13
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 4710169 - 4710296
Alignment:
| Q |
95 |
tatatatatgttgttatggattctgtttttgtagcatctgtattaggctcttcttgcagactgaaagaattttgcacaaggcagcacaattcacttaaga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710169 |
tatatatatgttgttatggattctgtttttgtagcatctgtattaggctcttcttgcagactgaaagaattttgcacaaggcagcacaattcacttaaga |
4710268 |
T |
|
| Q |
195 |
tgatttacgaaatttgaaaagaaaaaac |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
4710269 |
tgatttactaaatttgaaaagaaaaaac |
4710296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4710043 - 4710117
Alignment:
| Q |
1 |
cagacattggttcactgatccatacaatcagaattacaaaataatcagcattagcagccaccgttttgttatgtg |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4710043 |
cagacattggttcactgatccatacaatcagaattacaaaataatcagcattagcagccaccgttttgttatgtg |
4710117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 54244864 - 54244993
Alignment:
| Q |
99 |
tatatgttgttatggattctgtttttgtagcatctgtattaggct------cttcttgcagactgaaagaattttgcacaaggcagcacaattcacttaa |
192 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54244864 |
tatatgttgttttggattctgttttttcaacatctgtattagtcttagactcttcttgcagactgaaagaattttgtacaaggcagcacaattcacttaa |
54244963 |
T |
|
| Q |
193 |
gatgatttacgaaatttgaaaagaaaaaac |
222 |
Q |
| |
|
|| |||||| ||||||||||||||||||| |
|
|
| T |
54244964 |
aataatttactaaatttgaaaagaaaaaac |
54244993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 45252149 - 45252020
Alignment:
| Q |
99 |
tatatgttgttatggattctgtttttgtagcatctgtattaggct------cttcttgcagactgaaagaattttgcacaaggcagcacaattcacttaa |
192 |
Q |
| |
|
||||||||||| | |||||||||||| | |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45252149 |
tatatgttgttttagattctgttttttcaacatctgtattagtcttagactcttcttgcagactgaaagaattttgtacaaggcagcacaattcacttaa |
45252050 |
T |
|
| Q |
193 |
gatgatttacgaaatttgaaaagaaaaaac |
222 |
Q |
| |
|
||| |||||| ||||||||||||||||||| |
|
|
| T |
45252049 |
gataatttactaaatttgaaaagaaaaaac |
45252020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University