View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13879_low_2 (Length: 593)
Name: NF13879_low_2
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_low_2 |
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| [»] scaffold1088 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Original strand, 22194774 - 22195352
Alignment:
| Q |
1 |
aatatgaaagttatgcaaactttgcacaaaattacaatctatataaaacatacctttgttgagaaatctttagtatcttccactttaatatgccatgttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22194774 |
aatatgaaagttatgcaaactttgcacaaaattacaatctatataaaacatacctttgttgagaaatctttagtatcttccacagtaatatgccatgttc |
22194873 |
T |
|
| Q |
101 |
ccttggagccaaaaggagagccattaccactccataattcccatgacttcatttcttcattagactctccaacataatcaatatcaatgactttggaatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22194874 |
cctttgagccaaaaggagagccattaccactccataattcccatgacttcatttcttcattagactctccaacataatcaatatcaatgacttttgaatt |
22194973 |
T |
|
| Q |
201 |
gaaccttatgtaaggaatgctggagaaatgtttagcataggagttaagatattcttgcacttgatggttattgggattatcttcttttacagaacaatcc |
300 |
Q |
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| T |
22194974 |
gaaccttatgtaaggaatgatggagaaatgttgagcataggagttaagatattcttgcacttgatggttattgggattatcttcttttacagaagaatcc |
22195073 |
T |
|
| Q |
301 |
catggaaactatgaaaattggcatgcttgttttgggttttgaagtttagtagattcaatagtatgcctccataatcctccaacaccatcatcagcttcaa |
400 |
Q |
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| T |
22195074 |
catggaaaatctgaaaattggtatgcttgttttgggttttgaagtttagtagattcaatagtatgcctccataatcctccaacaccatcatcagcttcaa |
22195173 |
T |
|
| Q |
401 |
agacaattggattaaaaccaatttgtagaacatatttgcaagcaagtaggccacttattcctgcaccaacaattgcaactcttttttccattttataaat |
500 |
Q |
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| T |
22195174 |
agacaattggattaaaaccaatttgtgtaacatatttgcaagcaagtaggccacttattcctgcaccaacaattgcaactcttttttccattttataaat |
22195273 |
T |
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| Q |
501 |
aataagactaattgctaggttattatttgctctgatgtactcagatatagttgcaggcaattatcttttgaaataaatg |
579 |
Q |
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| T |
22195274 |
aataagactaattgctaggttattatttgctctgatgtactcagatatagttgcaggcaattatcttttgaaataaatg |
22195352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 59 - 493
Target Start/End: Complemental strand, 22409659 - 22409225
Alignment:
| Q |
59 |
ttgagaaatctttagtatcttccactttaatatgccatgttcccttggagccaaaaggagagccattaccactccataattcccatgacttcatttcttc |
158 |
Q |
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| T |
22409659 |
ttgagaaatccttagtatcttccacagtaatatgccatgttcccttggatccaaaactagtgccattaccactccataattcccatgacttcatttcttc |
22409560 |
T |
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| Q |
159 |
attagactctccaacataatcaatatcaatgactttggaattgaaccttatgtaaggaatgctggagaaatgtttagcataggagttaagatattcttgc |
258 |
Q |
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| T |
22409559 |
attagactctccaacataatcaatatcaatgacttttgaattgaaccttatgtaaggaatgatggagaaatgtttagcataggagttaagatattcttgc |
22409460 |
T |
|
| Q |
259 |
acttgatggttattgggattatcttcttttacagaacaatcccatggaaactatgaaaattggcatgcttgttttgggttttgaagtttagtagattcaa |
358 |
Q |
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| T |
22409459 |
acttgatggttattgggattatcttcttttacagaagaatcccatggaaaatctataaattgaaaatcttgtctagggttttggatttttgtgctttcaa |
22409360 |
T |
|
| Q |
359 |
tagtatgcctccataatcctccaacaccatcatcagcttcaaagacaattggattaaaaccaatttgtagaacatatttgcaagcaagtaggccacttat |
458 |
Q |
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| T |
22409359 |
tcgtatgcctccattgtccaccaacgccatcatcagcttcaaagacaattggatgaaaaccaatttgtgtaacatatttgcaggcaagtaggccactgat |
22409260 |
T |
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| Q |
459 |
tcctgcaccaacaattgcaactcttttttccattt |
493 |
Q |
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| T |
22409259 |
tcctgcaccaacaattgcaactcttttttccattt |
22409225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1088 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold1088
Description:
Target: scaffold1088; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 493
Target Start/End: Complemental strand, 2839 - 2369
Alignment:
| Q |
22 |
ttgcacaaaattacaatctatataaaacatacctttgttgagaaatctttagtatcttccactttaatatgccatgttcccttggagccaaaaggagagc |
121 |
Q |
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| T |
2839 |
ttgcacaaaattacaattcatatata-catacctcggtggtgaaattcttagtatcttctacggttagatgccaagttcccttagaaccaaatggacttc |
2741 |
T |
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| Q |
122 |
cattaccactccataattcccatgacttcatttcttcattagactctccaacataatcaatatcaatgactttggaattgaaccttatgtaaggaatgct |
221 |
Q |
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| T |
2740 |
cattaccactccacaattcccatgtcttcatttcttcatgagactccccaacataatcaatatcaatgacttttgaattgaatctgatgtatggaatgat |
2641 |
T |
|
| Q |
222 |
ggagaaatgtttagcataggagttaagatattcttgcacttgatggttattgggattatcttcttttacagaacaatcccatggaaactatgaaaattgg |
321 |
Q |
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||| ||||||| |||||||||||||||||| ||||||||||| || ||| | ||| |||||||||||||||| ||||||||||||| | || ||| ||| |
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| T |
2640 |
ggaaaaatgttgagcataggagttaagataatcttgcacttgttgattacttggaaaatcttcttttacagaagaatcccatggaaaatctgtaaactgg |
2541 |
T |
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| Q |
322 |
catgcttgttttgggttttgaagtttagtagattcaatagtatgcctccataatcctccaacaccatcatcagcttcaaagacaattggattaaaaccaa |
421 |
Q |
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| T |
2540 |
aaatcttgttttttggtttggagtttggtagactgaatagtatgtctccatattccaccaatgtcatcatcagcttcgtagacaattggatgaaaaccaa |
2441 |
T |
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| Q |
422 |
tttgtagaacatatttgcaagcaagtaggccacttattcctgcaccaacaattgcaactcttttttccattt |
493 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
2440 |
tctgtagaacatatttgcaggcaagtaggccacttattcctgccccaacaattgcaacatttttttccattt |
2369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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