View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13879_low_3 (Length: 506)
Name: NF13879_low_3
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 52971346 - 52970855
Alignment:
| Q |
1 |
cttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagcttttgatgtttttgatgaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52971346 |
cttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgaga |
52971247 |
T |
|
| Q |
101 |
acaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971246 |
acaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcac |
52971147 |
T |
|
| Q |
201 |
aatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaaccacttctgctgctaatctgtttgttgttcccttatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52971146 |
aatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaaccacttctgctgctgatctgtttgttgttcccttatt |
52971047 |
T |
|
| Q |
301 |
taagaaggatattcatataatataacataagcttagtagatgtttgcatccacggtgatttttggcaaaattacgtgatttagttgaatat-nnnnnnnt |
399 |
Q |
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| T |
52971046 |
taagaaggatattcatataatataacataagcttagttgatgtttgcatccatggtgatttttggcaaaattacgtgatttagttgaatataaaaaaaat |
52970947 |
T |
|
| Q |
400 |
gttaattttgctcaatccaaccattaaaatgaattcatatgacaaat---ataaaccaacagatttctcaagaaaaacaaagaagcaagtac |
488 |
Q |
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| T |
52970946 |
gttaattttgctcaatccaaccattaaaatgaattcatatgacaaatataataaaccaacagatttctcaagaaaaacaaagaagcaagtac |
52970855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 52967369 - 52967223
Alignment:
| Q |
90 |
ttttgatgagaacaaagatggttttatt-gatgcaaaggagttgcaaagagttcttgttatttt--gggattgaaacaaggatcagaatttgagaactgc |
186 |
Q |
| |
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||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||| || |
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| T |
52967369 |
ttttgatgacaacaaagatggttttgtttgatgcataggagttgcaaagagttcttgctattttttggggttcaaacaaggatcagaatttgagaaatgt |
52967270 |
T |
|
| Q |
187 |
caaaagatgatcacaatttttgatgaaaatcaagatggaagaattga |
233 |
Q |
| |
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|||||||| |||| | |||||||||||||||||||| ||||||||| |
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| T |
52967269 |
caaaagattatcaagaattttgatgaaaatcaagatgaaagaattga |
52967223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 2855835 - 2856097
Alignment:
| Q |
1 |
cttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagcttttgatgtttttgatgaga |
100 |
Q |
| |
|
||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| ||||| |||||||||||||||||||||| |
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| T |
2855835 |
cttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttgatgtttttgatgaga |
2855934 |
T |
|
| Q |
101 |
acaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcac |
200 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||| | |||||||||||| || |||| || ||| ||||||| || || |||||||| | |
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| T |
2855935 |
acaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggatttaaggaaggttcggaagttgagaattgtcagaagatgattaa |
2856034 |
T |
|
| Q |
201 |
aatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaa |
263 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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|
| T |
2856035 |
gaattttgatgcaaatcaagatggaagaattgatttcattgaatttgtaaaaattatggaaaa |
2856097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 2851825 - 2851900
Alignment:
| Q |
81 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggatt |
158 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||| |||||||||| |||||||||||||||| | |||||||||||| |
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|
| T |
2851825 |
tttttatggttttaatgagaacaaagatggtt--attgatgcaatggagttgcaaagagttatgtgtattttgggatt |
2851900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2851738 - 2851790
Alignment:
| Q |
1 |
cttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatga |
53 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||| ||||||| |||||||| |
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| T |
2851738 |
cttgaagaaaaatatggttcaaaggagcttcttgaattgtttgatgagaatga |
2851790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 10477754 - 10478017
Alignment:
| Q |
1 |
cttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagcttttgatgtttttgatgaga |
100 |
Q |
| |
|
||||| ||||| |||||||| || || |||| |||| ||||||| ||||||||||| ||||||| ||| ||||| |||||||| ||||||||||||| |
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| T |
10477754 |
cttgatgaaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggcttttgacgtttttgatgaga |
10477853 |
T |
|
| Q |
101 |
acaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcac |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| |||| | |||| || |||| || || |||||||||| |
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|
| T |
10477854 |
acaaagatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaagaattgtcagaagatgatcaa |
10477953 |
T |
|
| Q |
201 |
aatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaac |
264 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||| |
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|
| T |
10477954 |
gaattttgatgaaaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaac |
10478017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8216124 - 8216341
Alignment:
| Q |
1 |
cttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagcttttgatgtttttgatgaga |
100 |
Q |
| |
|
||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| | || |||||||||||||||||||||| |
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|
| T |
8216124 |
cttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtttagatggcttttgatgtttttgatgaga |
8216223 |
T |
|
| Q |
101 |
acaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcac |
200 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||| ||| | |||||||||||| || |||| |||||| ||||||| || || |||||||| | |
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|
| T |
8216224 |
acaaagatggttttattgattcaatggagttgaaaaatgttatgtgtattttgggatttaaggaaggttcagaagttgagaattgtcagaagatgattaa |
8216323 |
T |
|
| Q |
201 |
aatttttgatgaaaatca |
218 |
Q |
| |
|
| |||||||| |||||| |
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|
| T |
8216324 |
gaattttgatgcaaatca |
8216341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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