View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13879_low_4 (Length: 464)
Name: NF13879_low_4
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 3592791 - 3592355
Alignment:
| Q |
18 |
ggatttatatcagaagtgcagattggtgcatggtgacctcagtgaatataatatactttattatgaggtgaatactcctttgggtgttatatttttagtg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592791 |
ggatttatatcagaagtgcagattggtgcatggtgacctcagtgaatataatatactttattatgaggtgaatactcctttgggtgttatatttttagtg |
3592692 |
T |
|
| Q |
118 |
actaaatgtctctgtaaattgtttgcttacatattctttacttaccagggtcacttgtatattattgatgtttctcaagcggttgaccttgaccatcctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3592691 |
actaaatgtctctgtaaattgtttgcttacatattctttacttaccagggtcacttgtatattattgatgtttctcaagcggttgacattgaccatcctt |
3592592 |
T |
|
| Q |
218 |
gcgctcattgtttactgtttgaagactgtaaacatgtatccgtaagttctcctaggaattagctgttgattacacatctcttgtcttcttcctcatgtat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
3592591 |
gcgctcattgtttactgtttgaagactgtaaacatgtatccgtaagttctcctaggaattggctgttgattacacatctcttgtcttctttctcatgtat |
3592492 |
T |
|
| Q |
318 |
tgcggggttgataaggacaaatgtgtgattaaaagtacttgctttcgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaaaaacagagctg |
417 |
Q |
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| T |
3592491 |
tgcggggttgataaggacaaatgtgtgattaaaagtacttgctttcgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaaaaacagagctg |
3592392 |
T |
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| Q |
418 |
tttaagtttattgttaatgcgttcattgctgatgatg |
454 |
Q |
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| T |
3592391 |
tttaagtttatagttaatgcgttcattgctgatgatg |
3592355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 22 - 454
Target Start/End: Original strand, 35716876 - 35717310
Alignment:
| Q |
22 |
ttatatcagaagtgcagattggtgcatggtgacctcagtgaatataatatactttattatgaggtgaatactcctttgggtg-ttatatttttagtgact |
120 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||| ||| |
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| T |
35716876 |
ttatatcagaagtgcaaattggtgcatggtgacctcagtgaatataatatactctattatgaggtgaatactcctttggatgtttata-ttttaaagaca |
35716974 |
T |
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| Q |
121 |
aaatg--tctctgtaaattgtttgcttacatattctttacttaccagggtcacttgtatattattgatgtttctcaagcggttgaccttgaccatccttg |
218 |
Q |
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| T |
35716975 |
gagtgtctctctataaattgtttacttatttgttctttatttctcagggtcacttgtatattattgatgtttctcaagcggttgatcctgaccatcctca |
35717074 |
T |
|
| Q |
219 |
cgctcattgtttactgtttgaagactgtaaacatgtatccgtaagttctcctaggaattagctgttgattacacatctcttgtcttcttcctcatgtatt |
318 |
Q |
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| T |
35717075 |
tgctcttgattttctgcgtgaagactgtattcatgtatccgtaagtactcctaggcactagctgtaaattacatatctcttgtcctcttcctcatgtgtt |
35717174 |
T |
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| Q |
319 |
gcggggttgataaggacaaa-tgtgtgattaaaagtacttgcttt-cgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaaaaacagagct |
416 |
Q |
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| ||| | ||||| | ||| ||||||| ||||||||| ||| | || ||||||||||||| ||||| ||||||||||||||||||| || ||| || |
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| T |
35717175 |
gtagggctaataagaaaaaagaatgtgatt--aagtacttgttttacttgtaggatttctttaaaaaacatggtgtaggtgtcatgacaataagagaact |
35717272 |
T |
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| Q |
417 |
gtttaagtttattgttaatgcgttcattgctgatgatg |
454 |
Q |
| |
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||| | ||||||||| |||| | ||| ||||||||| |
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| T |
35717273 |
ttttgaatttattgttgatgcatcgatttctgatgatg |
35717310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 22 - 406
Target Start/End: Complemental strand, 28932571 - 28932183
Alignment:
| Q |
22 |
ttatatcagaagtgcagattggtgcatggtgacctcagtgaatataatatactttattatgaggtgaatactcctttgggtg-ttatatttttagtgact |
120 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |||||||||| |
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| T |
28932571 |
ttatatcagaagtgcagattggtgcatggcgacctcagtgaatataatatactttataatgaggtgaatacttctttgggtgtttata-ttttagtgacg |
28932473 |
T |
|
| Q |
121 |
aaatg--tctctgtaaattgtttgcttacatattctttacttaccagggtcacttgtatattattgatgtttctcaagcggttgaccttgaccatccttg |
218 |
Q |
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||||| ||||| || || |||| |||| ||||||| | ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28932472 |
aaatgtctctctatacatagtttacttatttattcttcatttatcagggtcacttatatattattgatgtttctcaaggggttgaccttgaccatcctct |
28932373 |
T |
|
| Q |
219 |
cgctcattgtttactgtttgaagactgtaaacatgtatccgtaagttc--tcctaggaattagctgttgattacacatctcttgtcttcttcctcatgta |
316 |
Q |
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||| | || ||| |||||||||||| || |||||||||||||| || ||| | || |||| || ||| |||||||||| |||||||||||| |
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| T |
28932372 |
tgcttttgagtttctgattgaagactgtattcacgtatccgtaagttcctcccgaggcactatctgtaaatcacatatctcttgtcatcttcctcatgt- |
28932274 |
T |
|
| Q |
317 |
ttgcggggttgataaggacaaatgtgtgattaaaagtacttgcttt-cgtgcaggatttctttaagaaacacggtgtaggtgtcatgacaa |
406 |
Q |
| |
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|| |||| | ||||| | ||| |||||| ||||||||| ||| | |||||||||||||||| || || ||||||||||||||||||| |
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| T |
28932273 |
gtggggggctaataagaaaaaaaaagtgattttaagtacttgttttacttgcaggatttctttaaaaagcatggtgtaggtgtcatgacaa |
28932183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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