View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13879_low_6 (Length: 357)
Name: NF13879_low_6
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 15180297 - 15180628
Alignment:
| Q |
11 |
cacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagacaa |
110 |
Q |
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| T |
15180297 |
cacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaa |
15180396 |
T |
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| Q |
111 |
ttttcgggaactgcaattgatcttgctagcaacgacaatgctatcactgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagcta |
210 |
Q |
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| T |
15180397 |
ttttctggaactgcaattgatcttgctagcaatgacaatgctatcaccgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagcta |
15180496 |
T |
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| Q |
211 |
acataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaaattagctgggaattcacaaacaagaattgataa |
310 |
Q |
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| T |
15180497 |
acataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataa |
15180596 |
T |
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| Q |
311 |
ttgttacatggattataatagtatagtcatgg |
342 |
Q |
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| T |
15180597 |
ttgttacatggattataatagtatagtcatgg |
15180628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 337
Target Start/End: Complemental strand, 38859568 - 38859270
Alignment:
| Q |
39 |
catgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagacaattttcgggaactgcaattgatcttgcta |
138 |
Q |
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| T |
38859568 |
catgagacattcatatcaagttgttttcttggacaacactcaacagttggcggtgaccatggcgagaaggactattccggggtcggtattgatcttgcta |
38859469 |
T |
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| Q |
139 |
gcaacgacaatgctatcactgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagctaacataatcacaggtgtgcattgttataa |
238 |
Q |
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| T |
38859468 |
gtaatgacaatgcaatcactgatgtcgcgattttctcggcagccactggtattgtgctaagaggtcaggctaacattctatcaggggtgcattgttataa |
38859369 |
T |
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| Q |
239 |
caaagcaacaggttttggtggaattggaattttgttgaaattagctgggaattcacaaacaagaattgataattgttacatggattataatagtatagt |
337 |
Q |
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| T |
38859368 |
caaagcagcaggatttggaggtataggtatcttagtgaaattggcaggaaattctttaactagaattgacaactgttatatggattatactggtatagt |
38859270 |
T |
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