View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13879_low_8 (Length: 269)
Name: NF13879_low_8
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_low_8 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 47923481 - 47923730
Alignment:
| Q |
20 |
ttgcactctttgtaaaatttaagagaagatgaattcatctctcctaaaatatgcttaaatgacatacatcatttttccaagaaactgcactcacacagtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47923481 |
ttgcactctttgtaaaatttaagagaagatgaattcatctctcctaaaatatgcttaaatgacatacatcatttttccaagaaactgcactcacacagtc |
47923580 |
T |
|
| Q |
120 |
gcatatgtttagaagaaatgtgtgtatgtaattgaagaaatgtcaatatttataaattatatagagatgtatgaatcatataaaagttatgcctaacctg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47923581 |
gcatatgtttagaagaaatgtgtgtatgtaattgaagaaatgtcaatatttataaattatatagagatgtatgaatcatataaaagttatgcctaacctg |
47923680 |
T |
|
| Q |
220 |
caattttggctatggagagaccaacacctatggaagaataaccaaaagac |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47923681 |
caattttggctatggagagaccaacacctatggaagaataaccaaaagac |
47923730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 47917415 - 47917472
Alignment:
| Q |
212 |
ctaacctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagac |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
47917415 |
ctaacctgcaattttggctatggagagaccaatgcctatggaagcataaccaaaagac |
47917472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 47909214 - 47909271
Alignment:
| Q |
212 |
ctaacctgcaattttggctatggagagaccaacacctatggaagaataaccaaaagac |
269 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
47909214 |
ctaacctgcaattttcgctatggagagaccaatgcctatggaagcataaccaaaagac |
47909271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University