View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13879_low_9 (Length: 249)
Name: NF13879_low_9
Description: NF13879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13879_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4710053 - 4709812
Alignment:
| Q |
1 |
accaatgtctggcaactctggcattctttgggattggagtgaacctagtggtattcctgacaagggtggtaggacaaaataacgcggaagccgccaacaa |
100 |
Q |
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| T |
4710053 |
accaatgtctggcaactctggcattctttgggattggagtgaacctagtggtattcctgacaagggtggtaggacaaaataatgcagaagccgccaacaa |
4709954 |
T |
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| Q |
101 |
cgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4709953 |
cgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcag |
4709854 |
T |
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| Q |
201 |
gtcatttttgtaattgtaagtaacgcctctcagtttcatctc |
242 |
Q |
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| T |
4709853 |
gtcatttttgtaattgtaagtaacgcctctcagtttcatctc |
4709812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 40742320 - 40742522
Alignment:
| Q |
21 |
gcattctttgggattggagtgaacctagtggtattcctgacaagggtggtaggacaaaataacgcggaagccgccaacaacgtgagcaaatggactggaa |
120 |
Q |
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| T |
40742320 |
gcattctttggagttggagtgaacctagttctgttcttgacaagggtgttgggtcaagataatgctgctgctgctaacaatgtcagcaagtggactggca |
40742419 |
T |
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| Q |
121 |
ctgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcaggtcatttttgtaattgtaag |
220 |
Q |
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| T |
40742420 |
cagtttacatcttctctcttgttggtgctttccttagtgattcttattggggaagatacaaaacatgtgctatctttcaaggcatttttgtaaccgtaag |
40742519 |
T |
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| Q |
221 |
taa |
223 |
Q |
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||| |
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| T |
40742520 |
taa |
40742522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 2743494 - 2743576
Alignment:
| Q |
96 |
aacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagata |
178 |
Q |
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||||| |||||||| ||||| || || ||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||| |
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| T |
2743494 |
aacaatgtgagcaagtggacagggacagtttacatcttttctcttcttggagctttcctcagtgactcttactggggaagata |
2743576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 3804657 - 3804575
Alignment:
| Q |
96 |
aacaacgtgagcaaatggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagata |
178 |
Q |
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||||| || ||||| |||||||||||||||||||| || || || ||||||| ||||| ||||| ||||||||||||||||| |
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| T |
3804657 |
aacaatgtcagcaagtggactggaactgtttacattttttcactcttgggagcattccttagtgattcttattggggaagata |
3804575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 396068 - 396157
Alignment:
| Q |
111 |
tggactggaactgtttacatcttctctctagtgggagctttcctaagtgactcttattggggaagatataaaacatgtgctgtctttcag |
200 |
Q |
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|||||||||||||||||||| || || || ||||||| ||||| ||||| ||||||||||||||||| |||||| ||| |||||||| |
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| T |
396068 |
tggactggaactgtttacatattttcactcttgggagcattccttagtgattcttattggggaagatacttaacatgcgctatctttcag |
396157 |
T |
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