View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_high_1 (Length: 526)
Name: NF1387_high_1
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 65 - 497
Target Start/End: Complemental strand, 10651214 - 10650782
Alignment:
| Q |
65 |
caaaggagtatggagaaagaccctgaaaagaagaaataccctggtggtgcttttgatcctttgggatactctaaagaccctaaaaagttccatgaataca |
164 |
Q |
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| T |
10651214 |
caaaggagtatggagaaagaccctgaaaagaagaaataccctggtggtgcttttgatcctttgggatactctaaagaccctaaaaagttccatgaataca |
10651115 |
T |
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| Q |
165 |
aaatcaaagaagttaagaatggtaagcaagagctttatgtcgcacaatacaacaccgaagatagatatagaaattttatttgaacatcgatccgtgactc |
264 |
Q |
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| T |
10651114 |
aaatcaaagaagttaagaatggtaagcaagagctttatgtcgcacaatacaacaccgaagatagatatagaaattttatttgaacatcgatccgtgactc |
10651015 |
T |
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| Q |
265 |
taaaattcgacaacattttaaatgattaacacgtttcacacaagtggttaacatagtgcaatgagtggttattggataactcgttaatcatcgactgaaa |
364 |
Q |
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| T |
10651014 |
taaaattcgacaacattttaaatgattaacacgtttcacacaagtggttaacatagtgcaatgagtggttattggataactcgttaatcatcgactgaaa |
10650915 |
T |
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| Q |
365 |
attatttgccacaaaatttgaacgttattaatcacaatttcaggtgtttcaactacatgcagatttgaatacttgaaactcatggttaatcgtgttcaaa |
464 |
Q |
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| T |
10650914 |
attattagccacaaaatttgaatgttattaatcacaatttcaggtgtttcaactacatgcagatttgaatacttgaaactcatggttaatcgcgttcaaa |
10650815 |
T |
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| Q |
465 |
tttgtggttgatgaagttaatgagttgcgacat |
497 |
Q |
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| T |
10650814 |
tttgtggttgatgaagttaatgagttgcgacat |
10650782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 471
Target Start/End: Original strand, 5578763 - 5578837
Alignment:
| Q |
397 |
cacaatttcaggtgtttcaactacatgcagatttgaatacttgaaactcatggttaatcgtgttcaaatttgtgg |
471 |
Q |
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| T |
5578763 |
cacaatttcaagtgttccaactacatgtggatttcaacacttgaaaatcaagattaatcgtgtttaaatttgtgg |
5578837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 35483334 - 35483406
Alignment:
| Q |
401 |
atttcaggtgtttcaactacatgcagatttgaatacttgaaactcatggttaatcgtgttcaaatttgtggtt |
473 |
Q |
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| T |
35483334 |
atttcaggtgttccaactatatgtagatttgaacactggaagatcaaggttaatcacgtttaaatttgtggtt |
35483406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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