View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_high_17 (Length: 293)
Name: NF1387_high_17
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 36745176 - 36744894
Alignment:
| Q |
1 |
tcatctttcaagaaaaggattgtcctagtggcataagactttggaataggtttgtttatatacttcaagtatgacatgaatgcgtcatggtaatccaaaa |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745176 |
tcatctttcaagaataggattgtcctagtggcataagactttggaataggtttgtttatatacttcaagtatgacatgaatgcgtcatggtaatccaaaa |
36745077 |
T |
|
| Q |
101 |
tgaatagcctctcgtcttgaattgcctgttccacaagtaaatgaatacaaattcaatcaacatcaagaggataaatcaatgaagacatatataatgtctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745076 |
tgaatagcctctcgtcttgaattgcctgttccacaagtaaatgaatacaaattcaatcaacatcaagaggataaatcaatgaagacatatataatgtctt |
36744977 |
T |
|
| Q |
201 |
gtgtgattttctttgaaacaatacacatatatttaccttttctactgtgagtccatccgtgttaatctccaagtgttcctttg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36744976 |
gtgtgattttctttgaaacaatacacatatatttaccttttctactgtgagtccatccgtgttaatctccaagtgttcttttg |
36744894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9605216 - 9605114
Alignment:
| Q |
1 |
tcatctttcaagaaaaggattgtcctagtggcataagactttggaataggtttgtttatatacttcaagtatgacatgaatgcgtcatggtaatccaaaa |
100 |
Q |
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|||||||| |||||||||||||||||||| ||||||| |||||| || ||||||||| | || ||| ||| ||||||||| ||||| ||||| || | |
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| T |
9605216 |
tcatcttttaagaaaaggattgtcctagttgcataag-ctttggcat--ttttgtttatcttctccaaaaatggcatgaatgcatcatgataatctaaga |
9605120 |
T |
|
| Q |
101 |
tgaata |
106 |
Q |
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|||||| |
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| T |
9605119 |
tgaata |
9605114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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