View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_high_8 (Length: 412)
Name: NF1387_high_8
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 205 - 383
Target Start/End: Complemental strand, 3016264 - 3016086
Alignment:
| Q |
205 |
tttctttctcaacatcacaatcatagttataaaaattccatttatttgggaatcaaagaagttcaatatgtaaaatccaattttaattcaagcacatacc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016264 |
tttctttctcaacatcacaatcatagttataaaaattccatttatttgggaatcaaagaagttcaatatgtaaaatccaattttaattcaagcacatacc |
3016165 |
T |
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| Q |
305 |
ttaatgactacttgttgccctttctccgctctataaaccggtttaaggttattctcaatggaggcgatgcggccaatat |
383 |
Q |
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| T |
3016164 |
ttaatgaatacttgttgccctttctccgctctataaaccggtttaaggttattctcaatggaggcgatgcggccaatat |
3016086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 3016420 - 3016288
Alignment:
| Q |
22 |
catcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacagaatactatcacttttc |
121 |
Q |
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| T |
3016420 |
catcatcaatcccaaaatgcctcccaaacattttctgtcgttcctcagaattgctgccaacaatctgcaaacaaagttcaacagaatactatcacttttc |
3016321 |
T |
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| Q |
122 |
tatcaatgtaaaaatgttactagtttatgataa |
154 |
Q |
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| T |
3016320 |
tatcaatgtaaaaatgttactagtttatgataa |
3016288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 271 - 383
Target Start/End: Original strand, 40671163 - 40671279
Alignment:
| Q |
271 |
tatgtaaaatccaattttaattcaagcacat----accttaatgactacttgttgccctttctccgctctataaaccggtttaaggttattctcaatgga |
366 |
Q |
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| T |
40671163 |
tatgtaaaatccaattttaactcaagcacatgcataccttaatgactacttgctgccctttcttcgctttatcaaccggtttaaggttattctcaatgga |
40671262 |
T |
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| Q |
367 |
ggcgatgcggccaatat |
383 |
Q |
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||| ||||||||||||| |
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| T |
40671263 |
ggcaatgcggccaatat |
40671279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 40670790 - 40670871
Alignment:
| Q |
24 |
tcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacag |
105 |
Q |
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| T |
40670790 |
tcatcaatccaaaaatgcctcccaaacattttctgtcgttcctcagaactgctgccaacaatctgcaaaccaagttgaacag |
40670871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 40670971 - 40671084
Alignment:
| Q |
112 |
atcacttttctatcaatgtaaaaatgttactagtttatgataaaactatggctacaaataacttataataacagacattagtcannnnnnnnctttcttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||||||| |||||||| |
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| T |
40670971 |
atcacttttctatcaatgtaaaaatgttactagtttatgataaaactacagctacaaataaact-taa-aacagacattagtcaattcttttctttcttt |
40671068 |
T |
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| Q |
212 |
ctcaacatcacaatca |
227 |
Q |
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||||||||||||||| |
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| T |
40671069 |
ttcaacatcacaatca |
40671084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 383
Target Start/End: Complemental strand, 44629926 - 44629806
Alignment:
| Q |
263 |
aagttcaatatgtaaaatccaattttaattcaagcacataccttaatgactacttgttgccctttctccgctctataaaccggtttaaggttattctcaa |
362 |
Q |
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||||||| |||||||||| ||| ||||||||||||||||||||||||| |||||| |||||||||| ||| || |||||||||| |||||||||||| |
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| T |
44629926 |
aagttcattatgtaaaattcaactttaattcaagcacataccttaatggctactttctgccctttcttcgcataatcaaccggtttatggttattctcaa |
44629827 |
T |
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| Q |
363 |
tggaggcgatgcggccaatat |
383 |
Q |
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||||||| ||||| ||||||| |
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| T |
44629826 |
tggaggcaatgcgaccaatat |
44629806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 44630288 - 44630203
Alignment:
| Q |
22 |
catcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacagaa |
107 |
Q |
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||||||||||| |||||| |||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
44630288 |
catcatcaatctcaaaatgcctcccgaacattttctgctgttcttcagaattgctgccaacaatctgcaaacaaagttgaacagaa |
44630203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 44608314 - 44608229
Alignment:
| Q |
22 |
catcatcaatcccaaaattcctcccaaacattttctgtcgttcctcagaattgttgccaacaatctgcaaacaaagttcaacagaa |
107 |
Q |
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|||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||||| |
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| T |
44608314 |
catcattaatcccaaaatgtctcccaaacattttctgctgttcctcagaatttctgcctacaatctgcaaaccaagttgaacagaa |
44608229 |
T |
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