View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_low_11 (Length: 337)
Name: NF1387_low_11
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_low_11 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 3189 - 2867
Alignment:
| Q |
8 |
ccaacaaaatataaaaacccaacaacctccttttggaaaattttggctaaaacactctttaataataaaccaatgttagcaggaggtttacagaaacacc |
107 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||| |
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| T |
3189 |
ccaacacaatataaaaacccaacaacccccttttggaaaattttggctaaaacactctttaataataaaccaatattagcaggtggtttacaaagacacc |
3090 |
T |
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| Q |
108 |
ttctttcatgttaacacataaaacatcttgaaagaaagaaaaacttcgtcaacgctacttcagaagaaatcttcaaatgaaaataacgcacaagaataaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
3089 |
ttctttcatgttaacacataaaacatcttgaaagaaagaaaaacttcgtcaacgctacttcagaagaaatctttaaataaaaataacgcacaagaataaa |
2990 |
T |
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| Q |
208 |
cttcaccaaaaacatcagaggcatactacaacagaatttggaaatacccaacctcacataaaagcttcaaacacacagggagaaataaactccacaaaaa |
307 |
Q |
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||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
2989 |
cttcagcaaaaacaccagaggcatactacaatagaatttggaaatacccagcctcacataaaagcttcaaacacacaaggagaaataaactctacaaaaa |
2890 |
T |
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| Q |
308 |
tatcatacccagagagaaataaa |
330 |
Q |
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| T |
2889 |
tatcatacccagggagaaataaa |
2867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 332
Target Start/End: Complemental strand, 20073185 - 20072979
Alignment:
| Q |
131 |
catcttgaaagaaagaaaaa-----cttcgtcaacgctacttcagaagaaatcttcaaatgaaaataacgcacaag-aataaacttcaccaaaaacatca |
224 |
Q |
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| T |
20073185 |
catcttgaaagaaagaaaaaaaagacttcgtcaacggtactccaaaagaaatcttctaataaaaataacgcagaagtggaaaacatcaccaaaaacatca |
20073086 |
T |
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| Q |
225 |
gaggcatactacaacagaatttggaaatacccaacctcacataaaagcttcaaacacacagggagaaataaactccacaaaaatatcatacccagagaga |
324 |
Q |
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| T |
20073085 |
gaggcttactacagcggaaattggaaatatccagcctcaaagaaaa-cttcaaacacatagggagaaataaactccacaaaaataacatactcaatgaga |
20072987 |
T |
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| Q |
325 |
aataaact |
332 |
Q |
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|||||||| |
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| T |
20072986 |
aataaact |
20072979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 20075685 - 20075598
Alignment:
| Q |
8 |
ccaacaaaatataaaaacccaacaacctcctt--ttggaaaattttggctaaaacactctttaataataaaccaatgttagcaggagg |
93 |
Q |
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|||||| |||||||||| ||||||| |||| | ||| |||| ||| || || ||||| ||||||||||||||||||| ||||||||| |
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| T |
20075685 |
ccaacacaatataaaaatccaacaatctccctctttgaaaaaattttgcgaacacactttttaataataaaccaatgtaagcaggagg |
20075598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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