View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1387_low_12 (Length: 316)
Name: NF1387_low_12
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_low_12 |
 | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 1213097 - 1213324
Alignment:
| Q |
29 |
acttggggggtggaggggcgctataagaaaaataatagaccattgatgtgaacgaataatttagccnnnnnnnnnncttttacattttcgaatccaccac |
128 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
1213097 |
acttggggggtggaggggcgatataagaaaaataagagaccattgatgtgaacgaataatttagccttttttttttcttttacattttcgaatccatcac |
1213196 |
T |
|
| Q |
129 |
ccttagaagaagaaaaatacaattgaaatctgtagattgtacatgtagttgattagttgactaggatattgaaagaaataattaaagacaaaagcattag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1213197 |
ccttagaagaagaaaaatacaattgaaatctgtagattgtacatgtagttcattagttgactaggatattgaaagaaataattaaagacaaaagcattag |
1213296 |
T |
|
| Q |
229 |
cgaacaaattaaactaatctgtactgtt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1213297 |
cgaacaaattaaactaatctgtactgtt |
1213324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 13803542 - 13803574
Alignment:
| Q |
271 |
tgctcctccacaaggtctcaggttcgattatct |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
13803542 |
tgctcctcctcaaggtctcaggttcgattatct |
13803574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 15048090 - 15048051
Alignment:
| Q |
271 |
tgctcctccacaaggtctcaggttcgattatctgtggtgc |
310 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
15048090 |
tgctcctcctcaaggtctcaggttcgattatctctggtgc |
15048051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 2742 - 2701
Alignment:
| Q |
269 |
tctgctcctccacaaggtctcaggttcgattatctgtggtgc |
310 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
2742 |
tctgctcctcctcaaggtctcaggttcgattctctctggtgc |
2701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 16581738 - 16581779
Alignment:
| Q |
269 |
tctgctcctccacaaggtctcaggttcgattatctgtggtgc |
310 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
16581738 |
tctgctcctcctcaaggtctcaggttctattatctctggtgc |
16581779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 21775951 - 21775915
Alignment:
| Q |
271 |
tgctcctccacaaggtctcaggttcgattatctgtgg |
307 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
21775951 |
tgctcctcctcaaggtctcaagttcgattatctgtgg |
21775915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University