View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1387_low_14 (Length: 307)

Name: NF1387_low_14
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1387_low_14
NF1387_low_14
[»] chr3 (1 HSPs)
chr3 (30-305)||(36745223-36745498)
[»] chr8 (11 HSPs)
chr8 (43-148)||(6274156-6274261)
chr8 (43-148)||(6288406-6288511)
chr8 (43-148)||(6331535-6331640)
chr8 (43-148)||(6351894-6351999)
chr8 (49-148)||(6390630-6390729)
chr8 (58-148)||(7458732-7458822)
chr8 (43-148)||(6321028-6321133)
chr8 (49-148)||(6409835-6409934)
chr8 (46-148)||(6362830-6362932)
chr8 (58-148)||(7471134-7471224)
chr8 (40-169)||(6450452-6450581)
[»] chr1 (1 HSPs)
chr1 (43-146)||(36925655-36925758)
[»] chr5 (2 HSPs)
chr5 (40-169)||(9605567-9605696)
chr5 (167-239)||(9605326-9605398)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 305
Target Start/End: Complemental strand, 36745498 - 36745223
Alignment:
Q  30 caatgaactccgagcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36745498 caatgaactccgagcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacacctatttgta 36745399  T
Q  130 gctatgatgaatggctcaatcacgcaatgggtattcaaccagtgactcatgagttggtgaaagcaggcgtcatttacaactacatacgccttggccaatt 229  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36745398 gctatgatgaatggctcaatcacgcaatgtgtattcaaccagtgactcatgagttggtgaaagcaggcgtcatttacaactacatacgccttggccaatt 36745299  T
Q  230 gccaaattgttctttgaacaccatgtccttctggaggcaacagcactttactcacagctccatattattcgacatc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  36745298 gccaaattgttctttgaacaccatgtccttctggaggcaacagcactttactcacagctccatatttttcgccatc 36745223  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 6274156 - 6274261
Alignment:
Q  43 gcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg 142  Q
    ||||||||||| || |||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||| |||   |||||||| |||||||||||||    
T  6274156 gcaagtgcattaatgttcattgtgtcacgatagtgcggaagtaaaagcttatgaataggatgaaccacactaagatgcctatttgttgctatgatgaatg 6274255  T
Q  143 gctcaa 148  Q
    ||||||    
T  6274256 gctcaa 6274261  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 6288406 - 6288511
Alignment:
Q  43 gcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg 142  Q
    ||||||||||| || |||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||| |||   |||||||| |||||||||||||    
T  6288406 gcaagtgcattaatgttcattgtgtcacgatagtgcggaagtaaaagcttatgaataggatgaaccacactaagatgcctatttgttgctatgatgaatg 6288505  T
Q  143 gctcaa 148  Q
    ||||||    
T  6288506 gctcaa 6288511  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 6331535 - 6331640
Alignment:
Q  43 gcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg 142  Q
    ||||||||||| || ||||||||||||||||| || ||  ||||||| || |||||||| ||||||||||| |||   |||||||| |||||||||||||    
T  6331535 gcaagtgcattaatgttcattgtgtcacgataatgtggaagtagaagtttgtgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatg 6331634  T
Q  143 gctcaa 148  Q
    ||||||    
T  6331635 gctcaa 6331640  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 6351894 - 6351999
Alignment:
Q  43 gcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg 142  Q
    ||||||||||| || |||||||||||||| ||||||||  ||| ||| ||||||||||| ||||||||||| |||   || ||||| |||||||||||||    
T  6351894 gcaagtgcatttatgttcattgtgtcacggtagtgaggaagtaaaagtttatgaatagggtgaaccacactaagatgcctgtttgttgctatgatgaatg 6351993  T
Q  143 gctcaa 148  Q
    ||||||    
T  6351994 gctcaa 6351999  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 6390630 - 6390729
Alignment:
Q  49 gcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa 148  Q
    ||||| || |||||||||| ||||||||| ||  ||| ||| ||||||||||| ||||||||||| |||   |||||||| |||||||||||||||||||    
T  6390630 gcatttatgttcattgtgttacgatagtgtggaagtaaaagtttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa 6390729  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 7458732 - 7458822
Alignment:
Q  58 ttcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa 148  Q
    |||||||||||||| ||||| ||  ||| ||| ||||||||||| ||||||||||| |||   |||||||| |||||||||||||||||||    
T  7458732 ttcattgtgtcacggtagtgtggaagtaaaagtttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa 7458822  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 6321028 - 6321133
Alignment:
Q  43 gcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg 142  Q
    ||||||||||| || ||||||||||||||||| || ||  | ||||| || |||||||| ||||||||||| |||   ||||| || |||||||||||||    
T  6321028 gcaagtgcattaatgttcattgtgtcacgataatgtggaagcagaagtttgtgaatagggtgaaccacactaagatgcctattagttgctatgatgaatg 6321127  T
Q  143 gctcaa 148  Q
    ||||||    
T  6321128 gctcaa 6321133  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 6409835 - 6409934
Alignment:
Q  49 gcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa 148  Q
    ||||| || |||||||||| ||||||||| ||  |||  || ||||||||||| ||||||||||| |||   |||||||| |||||||||||||||||||    
T  6409835 gcatttatgttcattgtgttacgatagtgtggaagtaatagtttatgaatagggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa 6409934  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 6362830 - 6362932
Alignment:
Q  46 agtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggct 145  Q
    |||||||| || ||||| ||||||||||| || ||  | ||||| ||||||||||| ||||||||||| |||   |||||||| ||||||| ||||||||    
T  6362830 agtgcatttatgttcatcgtgtcacgataatgtggaagcagaagtttatgaatagggtgaaccacacttagatgcctatttgttgctatgacgaatggct 6362929  T
Q  146 caa 148  Q
    |||    
T  6362930 caa 6362932  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 7471134 - 7471224
Alignment:
Q  58 ttcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatggctcaa 148  Q
    |||||||||||||  ||||| ||  ||| ||| ||||||||| | ||||||||||| |||   |||||||| |||||||||||||||||||    
T  7471134 ttcattgtgtcacagtagtgtggaagtaaaagtttatgaatatggtgaaccacactaagatgcctatttgttgctatgatgaatggctcaa 7471224  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 6450452 - 6450581
Alignment:
Q  40 cgagcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatga 139  Q
    ||||||||| |||||||||| ||||||||||| || || ||   || |||||||| ||| || ||||  ||||| |||  ||||||||| ||||||||||    
T  6450452 cgagcaagtccattgatatttattgtgtcacggtaatgggggaataaaagcttattaatcgggtgaagtacacttagatgtctatttgttgctatgatga 6450551  T
Q  140 atggctcaatcacgcaatgggtattcaacc 169  Q
    |||| || |||||   ||| ||||||||||    
T  6450552 atggttccatcactgcatgagtattcaacc 6450581  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 146
Target Start/End: Complemental strand, 36925758 - 36925655
Alignment:
Q  43 gcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatgaatg 142  Q
    |||||| |||| |||||||| ||||||||| ||||||| ||||  |||||||||||||| ||||  ||||| ||||  ||||||| ||||||||||||||    
T  36925758 gcaagtccatttatattcatggtgtcacgaaagtgaggatgtaatagcttatgaatagggtgaagtacactaagacgcctatttgaagctatgatgaatg 36925659  T
Q  143 gctc 146  Q
    ||||    
T  36925658 gctc 36925655  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 9605696 - 9605567
Alignment:
Q  40 cgagcaagtgcattgatattcattgtgtcacgatagtgaggctgtagaagcttatgaataggatgaaccacactgagacatctatttgtagctatgatga 139  Q
    ||||||||| | |||||||| |||||||||||  | || || | ||| | ||||| |||||| ||||  ||||| |||  ||| ||||| ||||||||||    
T  9605696 cgagcaagtccgttgatatttattgtgtcacggaaatggggatctagcaacttattaatagggtgaagaacactaagatgtctgtttgttgctatgatga 9605597  T
Q  140 atggctcaatcacgcaatgggtattcaacc 169  Q
    ||||||||| |||   ||| ||||||||||    
T  9605596 atggctcaaccactgcatgagtattcaacc 9605567  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 9605398 - 9605326
Alignment:
Q  167 accagtgactcatgagttggtgaaagcaggcgtcatttacaactacatacgccttggccaattgccaaattgt 239  Q
    ||||||| ||||||||||| ||  |||| |  |||||||||| |||||  |||||||||||| ||||||||||    
T  9605398 accagtggctcatgagttgatggtagcatgaatcatttacaattacatgagccttggccaatagccaaattgt 9605326  T

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