View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_low_16 (Length: 299)
Name: NF1387_low_16
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 284
Target Start/End: Complemental strand, 1370954 - 1370700
Alignment:
| Q |
30 |
aaatgaactcgttaaaaacgactcaaagcaattgtgaataccttttttattagatcagttatgtatctttccatttcagcttgaggcttcaagagttctg |
129 |
Q |
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| T |
1370954 |
aaatgaactcgttaaaaatgactcaaagcaattgtgaataccttttttattagatcagttatgcatctttccatttcaccttgaggcttcaagagttctg |
1370855 |
T |
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| Q |
130 |
ctttaaaagggaagacctgtattggaaatatttagaattgatcaatgttcatttcgatattaaagatccaatgataattgacatttataaatcaaacaca |
229 |
Q |
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| T |
1370854 |
ctttaaaagggaatacctgtattggaaatatttagaattgatcaatgttcatttcgatattaaagatccaatgataattgacatttataaatcaaacaca |
1370755 |
T |
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| Q |
230 |
tgatttctcaccttatctctaagaaagttcataaccttttcacgaataacatcgt |
284 |
Q |
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| T |
1370754 |
taatttctcaccttatctctaagaaagttcataaccttttcacgaataacatcgt |
1370700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 34613434 - 34613551
Alignment:
| Q |
30 |
aaatgaactcgttaaaaacgactcaaagcaattgtgaataccttttttattagatcagttatgtatctttccatttcagcttgaggcttcaagagttctg |
129 |
Q |
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| T |
34613434 |
aaatgaacgggtaaaaaacaaatcaaagaaactgtgaatacattttttattagatcggttatgtgccgttccatttcctcttggggcttcaacagttcag |
34613533 |
T |
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| Q |
130 |
ctttaaaagggaagacct |
147 |
Q |
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| T |
34613534 |
ctttaatagggaagacct |
34613551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 34613624 - 34613669
Alignment:
| Q |
233 |
tttctcaccttatctctaagaaagttcataaccttttcacgaataa |
278 |
Q |
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| T |
34613624 |
tttctcaccttatctctaacaaaatttataaccttttcacgaataa |
34613669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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