View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1387_low_17 (Length: 294)

Name: NF1387_low_17
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1387_low_17
NF1387_low_17
[»] chr2 (28 HSPs)
chr2 (7-53)||(37480111-37480157)
chr2 (13-49)||(13803537-13803573)
chr2 (7-51)||(29503307-29503351)
chr2 (13-53)||(41908632-41908672)
chr2 (7-46)||(19244145-19244184)
chr2 (7-46)||(42327396-42327435)
chr2 (13-51)||(17737620-17737658)
chr2 (5-46)||(4060215-4060256)
chr2 (13-46)||(21195677-21195710)
chr2 (9-46)||(34041589-34041626)
chr2 (7-52)||(39715028-39715073)
chr2 (10-55)||(40791482-40791527)
chr2 (14-46)||(4262303-4262335)
chr2 (7-55)||(28846727-28846775)
chr2 (7-46)||(33582009-33582048)
chr2 (13-51)||(23052519-23052557)
chr2 (7-49)||(38854460-38854502)
chr2 (9-46)||(4438980-4439017)
chr2 (14-43)||(26276398-26276427)
chr2 (13-42)||(33839265-33839294)
chr2 (6-46)||(42922449-42922490)
chr2 (13-53)||(6099513-6099552)
chr2 (14-46)||(11251130-11251162)
chr2 (9-49)||(11738042-11738082)
chr2 (14-46)||(12086130-12086162)
chr2 (10-46)||(21939124-21939160)
chr2 (10-46)||(32687520-32687556)
chr2 (6-46)||(40416391-40416431)
[»] chr8 (30 HSPs)
chr8 (7-51)||(19703483-19703527)
chr8 (13-46)||(11819818-11819851)
chr8 (13-46)||(27750772-27750805)
chr8 (7-55)||(968398-968446)
chr8 (14-46)||(33017257-33017289)
chr8 (14-46)||(33727874-33727906)
chr8 (13-53)||(36205237-36205277)
chr8 (7-46)||(3624616-3624655)
chr8 (7-46)||(16852376-16852415)
chr8 (7-46)||(18897202-18897241)
chr8 (7-46)||(28783096-28783135)
chr8 (11-46)||(31408123-31408158)
chr8 (10-56)||(2069533-2069579)
chr8 (7-53)||(2203528-2203574)
chr8 (8-46)||(22193365-22193403)
chr8 (14-52)||(28787491-28787529)
chr8 (13-54)||(3524394-3524435)
chr8 (13-42)||(6536562-6536591)
chr8 (10-51)||(8059671-8059712)
chr8 (13-46)||(21566783-21566816)
chr8 (13-42)||(23361654-23361683)
chr8 (9-46)||(24675513-24675550)
chr8 (13-42)||(26688907-26688936)
chr8 (13-46)||(29858050-29858083)
chr8 (13-46)||(44780115-44780148)
chr8 (14-46)||(8794346-8794378)
chr8 (14-46)||(11928732-11928764)
chr8 (7-55)||(12281530-12281578)
chr8 (18-46)||(35690065-35690093)
chr8 (174-206)||(41194868-41194900)
[»] chr7 (38 HSPs)
chr7 (7-55)||(22760899-22760947)
chr7 (9-57)||(45709698-45709746)
chr7 (13-51)||(31835234-31835272)
chr7 (6-46)||(14058288-14058328)
chr7 (6-46)||(14368316-14368356)
chr7 (12-52)||(29916803-29916843)
chr7 (7-46)||(26459411-26459450)
chr7 (7-53)||(38374593-38374639)
chr7 (13-46)||(43215226-43215259)
chr7 (6-46)||(2962494-2962534)
chr7 (13-49)||(9183189-9183225)
chr7 (10-46)||(11700204-11700240)
chr7 (14-46)||(17041013-17041045)
chr7 (13-53)||(18056769-18056809)
chr7 (6-46)||(21558163-21558203)
chr7 (7-46)||(23552154-23552193)
chr7 (11-53)||(3280480-3280521)
chr7 (7-53)||(19553489-19553535)
chr7 (13-55)||(20335823-20335865)
chr7 (16-46)||(30301925-30301955)
chr7 (13-43)||(41519268-41519298)
chr7 (13-51)||(42712000-42712038)
chr7 (13-51)||(43590949-43590987)
chr7 (13-51)||(48771980-48772018)
chr7 (13-42)||(2882992-2883021)
chr7 (7-44)||(7801216-7801253)
chr7 (13-46)||(13106783-13106816)
chr7 (13-46)||(15137595-15137628)
chr7 (13-46)||(18363738-18363771)
chr7 (7-48)||(18891106-18891147)
chr7 (13-46)||(29385744-29385777)
chr7 (12-49)||(41519108-41519145)
chr7 (13-41)||(5579240-5579268)
chr7 (7-51)||(7499920-7499964)
chr7 (6-46)||(17113830-17113870)
chr7 (10-46)||(21570033-21570069)
chr7 (14-46)||(29785302-29785334)
chr7 (14-46)||(30217922-30217954)
[»] chr1 (31 HSPs)
chr1 (9-46)||(51814532-51814569)
chr1 (13-53)||(19528321-19528361)
chr1 (7-53)||(15065001-15065047)
chr1 (5-46)||(1247147-1247188)
chr1 (13-46)||(2799904-2799937)
chr1 (13-46)||(3265966-3265999)
chr1 (13-46)||(6122836-6122869)
chr1 (13-46)||(15786321-15786354)
chr1 (12-45)||(21392878-21392911)
chr1 (13-46)||(33700774-33700807)
chr1 (13-46)||(38947473-38947506)
chr1 (6-46)||(4566583-4566623)
chr1 (6-46)||(27567123-27567163)
chr1 (6-46)||(36371505-36371545)
chr1 (13-53)||(43446005-43446045)
chr1 (13-53)||(45266876-45266916)
chr1 (14-53)||(31605842-31605881)
chr1 (13-52)||(52029932-52029971)
chr1 (12-46)||(44961806-44961840)
chr1 (13-46)||(8177183-8177216)
chr1 (13-46)||(8904456-8904489)
chr1 (13-46)||(12587312-12587345)
chr1 (5-46)||(50919988-50920029)
chr1 (6-46)||(2220007-2220047)
chr1 (10-46)||(7219919-7219955)
chr1 (7-51)||(16169974-16170018)
chr1 (14-46)||(24019066-24019098)
chr1 (13-57)||(27223120-27223164)
chr1 (13-53)||(39966135-39966175)
chr1 (14-46)||(51281394-51281426)
chr1 (13-49)||(52336772-52336808)
[»] chr5 (17 HSPs)
chr5 (6-46)||(14285196-14285236)
chr5 (13-46)||(25627099-25627132)
chr5 (13-46)||(43442238-43442271)
chr5 (13-53)||(84866-84906)
chr5 (6-46)||(34984841-34984881)
chr5 (7-46)||(16773843-16773882)
chr5 (13-51)||(3315257-3315295)
chr5 (7-41)||(37148062-37148096)
chr5 (13-46)||(87424-87457)
chr5 (13-46)||(16436659-16436692)
chr5 (13-46)||(17028265-17028298)
chr5 (13-50)||(24907531-24907568)
chr5 (13-46)||(25979212-25979245)
chr5 (13-46)||(37258367-37258400)
chr5 (13-49)||(8779308-8779344)
chr5 (13-53)||(16457852-16457892)
chr5 (13-49)||(29173532-29173568)
[»] chr4 (34 HSPs)
chr4 (13-53)||(46295139-46295179)
chr4 (7-46)||(23377992-23378031)
chr4 (7-46)||(37109352-37109391)
chr4 (7-49)||(11592151-11592193)
chr4 (13-46)||(7949455-7949488)
chr4 (13-46)||(38869810-38869843)
chr4 (13-46)||(49576895-49576928)
chr4 (6-46)||(7292799-7292839)
chr4 (9-49)||(21775920-21775960)
chr4 (13-53)||(32992654-32992694)
chr4 (6-49)||(16581728-16581771)
chr4 (13-52)||(30938214-30938253)
chr4 (7-46)||(37274460-37274499)
chr4 (13-52)||(39509112-39509151)
chr4 (7-46)||(46329200-46329239)
chr4 (7-46)||(46545747-46545786)
chr4 (13-44)||(51622527-51622558)
chr4 (9-51)||(47044755-47044797)
chr4 (6-55)||(2185024-2185073)
chr4 (13-46)||(4249219-4249252)
chr4 (13-46)||(8030205-8030238)
chr4 (10-55)||(8931076-8931121)
chr4 (13-82)||(19238542-19238611)
chr4 (13-46)||(31759659-31759692)
chr4 (13-46)||(31826651-31826684)
chr4 (15-52)||(44865378-44865415)
chr4 (13-53)||(8325373-8325413)
chr4 (18-46)||(9693499-9693527)
chr4 (10-42)||(14451751-14451783)
chr4 (10-46)||(21375816-21375852)
chr4 (18-46)||(24991574-24991602)
chr4 (7-51)||(37720210-37720254)
chr4 (9-49)||(42644908-42644948)
chr4 (13-53)||(56440443-56440483)
[»] scaffold0291 (1 HSPs)
scaffold0291 (13-52)||(2465-2504)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-49)||(94969-95012)
[»] chr3 (38 HSPs)
chr3 (7-46)||(20501732-20501771)
chr3 (8-46)||(19154668-19154706)
chr3 (13-46)||(14186689-14186722)
chr3 (16-49)||(15048059-15048092)
chr3 (13-46)||(30311348-30311381)
chr3 (13-46)||(37788466-37788499)
chr3 (9-49)||(11642207-11642247)
chr3 (6-46)||(16354893-16354933)
chr3 (13-53)||(19716239-19716279)
chr3 (13-49)||(44743853-44743889)
chr3 (6-42)||(53412980-53413016)
chr3 (7-46)||(10445140-10445179)
chr3 (7-46)||(21960587-21960626)
chr3 (13-52)||(47454612-47454651)
chr3 (13-51)||(14339652-14339690)
chr3 (13-51)||(17108894-17108932)
chr3 (8-46)||(17765164-17765202)
chr3 (8-46)||(19066484-19066522)
chr3 (17-55)||(54990748-54990786)
chr3 (13-46)||(3427554-3427587)
chr3 (13-46)||(8075128-8075161)
chr3 (13-46)||(8170714-8170747)
chr3 (13-46)||(27093362-27093395)
chr3 (13-46)||(28703405-28703438)
chr3 (13-46)||(33899656-33899689)
chr3 (13-46)||(39253739-39253772)
chr3 (13-46)||(44069800-44069833)
chr3 (7-48)||(48583449-48583490)
chr3 (13-42)||(49452915-49452944)
chr3 (13-49)||(2667904-2667940)
chr3 (9-53)||(5499401-5499445)
chr3 (9-45)||(9557358-9557394)
chr3 (13-45)||(11612341-11612373)
chr3 (13-53)||(16900675-16900715)
chr3 (14-42)||(24353384-24353412)
chr3 (14-46)||(32320509-32320541)
chr3 (13-49)||(45308900-45308936)
chr3 (13-53)||(47236965-47237005)
[»] scaffold0194 (1 HSPs)
scaffold0194 (13-55)||(13038-13080)
[»] chr6 (9 HSPs)
chr6 (13-46)||(10338175-10338208)
chr6 (7-44)||(23910114-23910151)
chr6 (13-49)||(28363979-28364015)
chr6 (7-51)||(34444839-34444883)
chr6 (7-46)||(20213077-20213116)
chr6 (7-46)||(22107100-22107139)
chr6 (7-46)||(33549140-33549179)
chr6 (13-46)||(14199948-14199981)
chr6 (13-46)||(28841456-28841489)
[»] scaffold0180 (1 HSPs)
scaffold0180 (6-46)||(19963-20003)
[»] scaffold0126 (1 HSPs)
scaffold0126 (13-49)||(25345-25381)
[»] scaffold0258 (1 HSPs)
scaffold0258 (7-46)||(15324-15363)
[»] scaffold0299 (1 HSPs)
scaffold0299 (13-46)||(11570-11603)
[»] scaffold0238 (1 HSPs)
scaffold0238 (13-46)||(2712-2745)
[»] scaffold0004 (1 HSPs)
scaffold0004 (14-51)||(81560-81597)
[»] scaffold0122 (1 HSPs)
scaffold0122 (13-45)||(6921-6953)


Alignment Details
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 37480111 - 37480157
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37480111 acctgagagtgtgctcctcctcaaggtctcaggttcgattctccccg 37480157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 13803537 - 13803573
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  13803537 gagtgtgctcctcctcaaggtctcaggttcgattatc 13803573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 29503307 - 29503351
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
T  29503307 acctgggagtgtgctcctcctcaaggtctcaggttcgattctccc 29503351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 41908672 - 41908632
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  41908672 gagtgtgctcctcctcaaggtctcaagttcgattatccccg 41908632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 19244145 - 19244184
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  19244145 acctgagagtgtgctcctccccaaggtctcaggttcgatt 19244184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 42327435 - 42327396
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  42327435 acctgggagtgtgctcctcctcaaggtctcaggttcgatt 42327396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 17737658 - 17737620
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  17737658 gagtgtgctcctcctcaaggtctcatgttcgattatccc 17737620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 4060256 - 4060215
Alignment:
Q  5 aaacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  4060256 aaacctgagagtgtgcttctcctcaagatctcaggttcgatt 4060215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 21195710 - 21195677
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  21195710 gagtgtgctcctcctcaaggtctcaggttcgatt 21195677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 34041626 - 34041589
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34041626 ctgagagtgtgctcctcctcaaggtctcaggtttgatt 34041589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 39715028 - 39715073
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||||    
T  39715028 acctgggagtgtgctcctcctcgaggtctcaggttcgattctcccc 39715073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40791527 - 40791482
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||    
T  40791527 tgagagtgtgctccttctcaaggtctcaagttcgattctccccgat 40791482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 4262335 - 4262303
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||||||    
T  4262335 agtgtgctcctcctcaaggtctcaggttcgatt 4262303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 28846727 - 28846775
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    ||||| |||||||||||||||| | |||||||||||||||||| |||||    
T  28846727 acctgggagtgtgctcctcctcgatgtctcaggttcgattatcaccgat 28846775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 33582009 - 33582048
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  33582009 acctgagagtgtgctcctccttgaggtctcaggttcgatt 33582048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 23052557 - 23052519
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  23052557 gagtgtgcttctcctcaaggtctcaggttcgattctccc 23052519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 38854502 - 38854460
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||| |  |||||||||||||||||||||||||||    
T  38854502 acctgagagtgtacctctcctcaaggtctcaggttcgattatc 38854460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 4439017 - 4438980
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||| || ||||||||    
T  4439017 ctgagagtgtgctcctcctcaaggtcgcatgttcgatt 4438980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 26276398 - 26276427
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcg 43  Q
    ||||||||||||||||||||||||||||||    
T  26276398 agtgtgctcctcctcaaggtctcaggttcg 26276427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 33839294 - 33839265
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttc 42  Q
    ||||||||||||||||||||||||||||||    
T  33839294 gagtgtgctcctcctcaaggtctcaggttc 33839265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 42922449 - 42922490
Alignment:
Q  6 aacctgagagtgtgctcctcctc-aaggtctcaggttcgatt 46  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  42922449 aacctgggagtgtgctcctcctcaaaggtctcaggttcgatt 42922490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 6099552 - 6099513
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  6099552 gagtgtgctcctc-tcaaggtctcaggttcgattctccccg 6099513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 11251130 - 11251162
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||| ||||    
T  11251130 agtgtgctcctcctcaaggtctcaggtttgatt 11251162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11738082 - 11738042
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  11738082 ctgagagtgtgttcctcctcaaagtttcaggttcgattatc 11738042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 12086162 - 12086130
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||| |||||||||    
T  12086162 agtgtgctcctcctcaaggtctcgggttcgatt 12086130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 21939160 - 21939124
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||| || ||||||||||||||    
T  21939160 tgagagtgtgctcctcctcgagatctcaggttcgatt 21939124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 32687520 - 32687556
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||| |||||||| |||||||||||||||||    
T  32687520 tgagagtgtgttcctcctcgaggtctcaggttcgatt 32687556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 40416431 - 40416391
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| |||| |||||||||| ||||||||||||||||||    
T  40416431 aacctgggagtatgctcctccttaaggtctcaggttcgatt 40416391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 19703527 - 19703483
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  19703527 acctgagagtgtgctcctcctcaaggtctcaggttcgattctccc 19703483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 11819818 - 11819851
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  11819818 gagtgtgctcctcctcaaggtctcaggttcgatt 11819851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 27750772 - 27750805
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  27750772 gagtgtgctcctcctcaaggtctcaggttcgatt 27750805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 968398 - 968446
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    ||||| |||||||||||||||| ||||||||||||||||| || |||||    
T  968398 acctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgat 968446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 33017257 - 33017289
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||||||    
T  33017257 agtgtgctcctcctcaaggtctcaggttcgatt 33017289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 33727906 - 33727874
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||||||    
T  33727906 agtgtgctcctcctcaaggtctcaggttcgatt 33727874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 36205237 - 36205277
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  36205237 gagtgtgctcctcctcaaggtctcatgttcgattctccccg 36205277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 3624616 - 3624655
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  3624616 acctgggagtgtgctcctcttcaaggtctcaggttcgatt 3624655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16852376 - 16852415
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  16852376 acctgggagtgtgctcctcctcgaggtctcaggttcgatt 16852415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 18897202 - 18897241
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  18897202 accttagagtgtgctcctcctcaaggtctcatgttcgatt 18897241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 28783096 - 28783135
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  28783096 acctgggagtgtgctcctcctcaaggtctcatgttcgatt 28783135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 31408158 - 31408123
Alignment:
Q  11 gagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31408158 gagagtgtgctcctcctcaaggtttcaggttcgatt 31408123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 2069579 - 2069533
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgattatccccgata 56  Q
    |||||| ||||||||||| |||||||||| ||||||||||| |||||    
T  2069579 tgagagcgtgctcctcctaaaggtctcagattcgattatcctcgata 2069533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 2203528 - 2203574
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||| ||||||||||||||||||||||||||| || ||| ||||||    
T  2203528 acctgggagtgtgctcctcctcaaggtctcagggtcaattctccccg 2203574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 22193403 - 22193365
Alignment:
Q  8 cctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  22193403 cctgggagtgtgctcctcctcaaggtcttaggttcgatt 22193365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 28787529 - 28787491
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  28787529 agtgtgctcctcctcaaggtctcaggtttgattctcccc 28787491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 3524435 - 3524394
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccga 54  Q
    ||||||||||||||||||||||| |||||| ||| |||||||    
T  3524435 gagtgtgctcctcctcaaggtcttaggttcaattctccccga 3524394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 6536562 - 6536591
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttc 42  Q
    ||||||||||||||||||||||||||||||    
T  6536562 gagtgtgctcctcctcaaggtctcaggttc 6536591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 8059671 - 8059712
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  8059671 tgagagtgtgatcctcctcaaggtctcaggttccattctccc 8059712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 21566816 - 21566783
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||| |||||||||||||||||||||    
T  21566816 gagtgtgctcctactcaaggtctcaggttcgatt 21566783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 23361683 - 23361654
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttc 42  Q
    ||||||||||||||||||||||||||||||    
T  23361683 gagtgtgctcctcctcaaggtctcaggttc 23361654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 24675550 - 24675513
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  24675550 ctgagagtgtgctccttctcaaggtctcagattcgatt 24675513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 26688907 - 26688936
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttc 42  Q
    ||||||||||||||||||||||||||||||    
T  26688907 gagtgtgctcctcctcaaggtctcaggttc 26688936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 29858083 - 29858050
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  29858083 gagtgtgctcctcctcgaggtctcaggttcgatt 29858050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 44780148 - 44780115
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  44780148 gagtgtgctcctcctcaaggtctcaggtttgatt 44780115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 8794378 - 8794346
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||| ||||||||||||||||    
T  8794378 agtgtgctcctcctcagggtctcaggttcgatt 8794346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 11928764 - 11928732
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||| |||||||||||||||||    
T  11928764 agtgtgctcctcctcgaggtctcaggttcgatt 11928732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 12281530 - 12281578
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    |||||||||||||| ||||||| ||||||||| ||||||| || |||||    
T  12281530 acctgagagtgtgcccctcctcgaggtctcagattcgattttctccgat 12281578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 35690093 - 35690065
Alignment:
Q  18 tgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||    
T  35690093 tgctcctcctcaaggtctcaggttcgatt 35690065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 41194900 - 41194868
Alignment:
Q  174 attggataatgaatgataaaattgtaaataaaa 206  Q
    ||||||||| |||||||||||||||||||||||    
T  41194900 attggataaagaatgataaaattgtaaataaaa 41194868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 22760899 - 22760947
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  22760899 acctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgat 22760947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 45709746 - 45709698
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgattatccccgatac 57  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  45709746 ctgagagtgtgctcctcctcgaggtctcaggttcgattatctccgatac 45709698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 31835234 - 31835272
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31835234 gagtgtgctcctcctcaaggtctcaggttcgattatccc 31835272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 14058288 - 14058328
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  14058288 aacctgagagtgtgctcatcctcaaggtctcaggttcgatt 14058328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 14368316 - 14368356
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  14368316 aacctgagagtgtgctcatcctcaaggtctcaggttcgatt 14368356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 29916843 - 29916803
Alignment:
Q  12 agagtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  29916843 agagtgtgctcctcctcaaggtctcaggttcgattctcccc 29916803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 26459450 - 26459411
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  26459450 acctgggagtgtgctcctcctcaaggtctcaggttcgatt 26459411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 38374639 - 38374593
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||    
T  38374639 accttagagtgtgctcctcctcaaggtcttaggttcgattctccccg 38374593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 43215226 - 43215259
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  43215226 gagtgtgctcctcctcaaggtctcaggttcgatt 43215259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 2962494 - 2962534
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  2962494 aacctgtgagtgtgctcctcctcaagatctcaggttcgatt 2962534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 9183225 - 9183189
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9183225 gagtgtgctcctcctcaaagtctcaggttcgattatc 9183189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 11700204 - 11700240
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||| |||||||||||||||||||||||||||||    
T  11700204 tgagagtttgctcctcctcaaggtctcaggttcgatt 11700240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 17041045 - 17041013
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||||||    
T  17041045 agtgtgctcctcctcaaggtctcaggttcgatt 17041013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 18056809 - 18056769
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  18056809 gagtgtgctcctcctgaaggtctcaggttcgattctccccg 18056769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 21558163 - 21558203
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  21558163 aacctaagaatgtgctcctcctcaaggtctcaggttcgatt 21558203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 23552154 - 23552193
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  23552154 acctgggagtgtgctcctcctcaaggtctcaagttcgatt 23552193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 3280521 - 3280480
Alignment:
Q  11 gagagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  3280521 gagagtgtgctcctcctcaaggtctca-attcgattatccccg 3280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 19553489 - 19553535
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||| ||||||||||||||||||||||| |||||| ||| ||||||    
T  19553489 acctgggagtgtgctcctcctcaaggtcttaggttcaattctccccg 19553535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 20335865 - 20335823
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    |||||||||||||||| ||||||||||||||||| || |||||    
T  20335865 gagtgtgctcctcctcgaggtctcaggttcgattctcaccgat 20335823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 30301925 - 30301955
Alignment:
Q  16 tgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||||    
T  30301925 tgtgctcctcctcaaggtctcaggttcgatt 30301955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 41519298 - 41519268
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcg 43  Q
    |||||||||||||||||||||||||||||||    
T  41519298 gagtgtgctcctcctcaaggtctcaggttcg 41519268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 42712000 - 42712038
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  42712000 gagtgtgctcctcctcaaggtctcatgttcgattctccc 42712038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 43590949 - 43590987
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  43590949 gagtgtgctcctcctcaatgtctcaggttcgattctccc 43590987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 48771980 - 48772018
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  48771980 gagtgtgctcctccttgaggtctcaggttcgattatccc 48772018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 2882992 - 2883021
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttc 42  Q
    ||||||||||||||||||||||||||||||    
T  2882992 gagtgtgctcctcctcaaggtctcaggttc 2883021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 7801216 - 7801253
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcga 44  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  7801216 acctgggagtgtgctcctcttcaaggtctcaggttcga 7801253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 13106816 - 13106783
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| |||||||||||||||||||||||||||    
T  13106816 gagtgtactcctcctcaaggtctcaggttcgatt 13106783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 15137595 - 15137628
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  15137595 gagtgtgctcctcctcaaggtctcaggttagatt 15137628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 18363738 - 18363771
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  18363738 gagtgtgctcctcctcaaggtctcaggtttgatt 18363771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 18891106 - 18891147
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattat 48  Q
    |||| |||||||||||||||||||||||||| |||| |||||    
T  18891106 accttagagtgtgctcctcctcaaggtctcaagttcaattat 18891147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 29385777 - 29385744
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  29385777 gagtgtgctcctcctcaaggtctcaggtttgatt 29385744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 41519145 - 41519108
Alignment:
Q  12 agagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  41519145 agagtgtgctccttctcaaggtctcagattcgattatc 41519108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 5579268 - 5579240
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggtt 41  Q
    |||||||||||||||||||||||||||||    
T  5579268 gagtgtgctcctcctcaaggtctcaggtt 5579240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 7499964 - 7499920
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||||| |||||||| || ||||||||||||||||| ||||    
T  7499964 acctgagagtttgctcctcttcgaggtctcaggttcgattctccc 7499920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 17113830 - 17113870
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| ||||||||| ||||||||||||||| ||||||||    
T  17113830 aacctgggagtgtgcttctcctcaaggtctcaagttcgatt 17113870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 21570069 - 21570033
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  21570069 tgagagtgcgctcctcctcaaggtctcaagttcgatt 21570033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 29785334 - 29785302
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||| ||||||||    
T  29785334 agtgtgctcctcctcaaggtctcatgttcgatt 29785302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 30217922 - 30217954
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||| ||||||||    
T  30217922 agtgtgctcctcctcaaggtctcaagttcgatt 30217954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 51814532 - 51814569
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51814532 ctgagagtgtgctcctcctcaaggtctcaggttcgatt 51814569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 19528361 - 19528321
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  19528361 gagtgtgctcctcctcaaggtctcaggttcgattctccccg 19528321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 15065001 - 15065047
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  15065001 acctgagagtgtgctcatcctcaaggtctcaggttcaattttccccg 15065047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 1247147 - 1247188
Alignment:
Q  5 aaacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  1247147 aaacctgggagtgtactcctcctcaaggtctcaggttcgatt 1247188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 2799904 - 2799937
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  2799904 gagtgtgctcctcctcaaggtctcaggttcgatt 2799937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 3265966 - 3265999
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  3265966 gagtgtgctcctcctcaaggtctcaggttcgatt 3265999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 6122836 - 6122869
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  6122836 gagtgtgctcctcctcaaggtctcaggttcgatt 6122869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 15786354 - 15786321
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  15786354 gagtgtgctcctcctcaaggtctcaggttcgatt 15786321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 21392878 - 21392911
Alignment:
Q  12 agagtgtgctcctcctcaaggtctcaggttcgat 45  Q
    ||||||||||||||||||||||||||||||||||    
T  21392878 agagtgtgctcctcctcaaggtctcaggttcgat 21392911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 33700807 - 33700774
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  33700807 gagtgtgctcctcctcaaggtctcaggttcgatt 33700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 38947506 - 38947473
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  38947506 gagtgtgctcctcctcaaggtctcaggttcgatt 38947473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 4566583 - 4566623
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  4566583 aacctgggagtgtgctcctcctcagggtctcaggttcgatt 4566623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 27567163 - 27567123
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  27567163 aacctgagagtgtgctcctcttcaaggtctcagattcgatt 27567123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 36371505 - 36371545
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  36371505 aacctgggagtgtgctcctcctcaaggtctgaggttcgatt 36371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 43446005 - 43446045
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  43446005 gagtgtgctcctcctcaaggtctcatgttcgattctccccg 43446045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 45266876 - 45266916
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  45266876 gagtttgctcctcctcaaggtctcaggttcgattctccccg 45266916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 31605881 - 31605842
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  31605881 agtgtgctcctcctcaaggtctcaagttcgattctccccg 31605842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 52029971 - 52029932
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  52029971 gagtgtgctccttctcaaggtctcaggttcgattctcccc 52029932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 44961806 - 44961840
Alignment:
Q  12 agagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  44961806 agagtgtgctcctcctcagggtctcaggttcgatt 44961840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 8177216 - 8177183
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||| ||||||||||||    
T  8177216 gagtgtgctcctcctcaaggtttcaggttcgatt 8177183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 8904456 - 8904489
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||| ||||||||    
T  8904456 gagtgtgctcctcctcaaggtctcaagttcgatt 8904489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 12587312 - 12587345
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  12587312 gagtgtgctcctcctcgaggtctcaggttcgatt 12587345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 50919988 - 50920029
Alignment:
Q  5 aaacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||| |||| ||||| ||||||||||||    
T  50919988 aaacctgagagtgtgctcatccttaaggtttcaggttcgatt 50920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 2220007 - 2220047
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||| |||||||| |||||| |||||||||||||||||    
T  2220007 aacctgaaagtgtgcttctcctcgaggtctcaggttcgatt 2220047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 7219955 - 7219919
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||| | |||||||||||||||    
T  7219955 tgagagtgtgctcctcctcgaagtctcaggttcgatt 7219919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 16170018 - 16169974
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||| ||||||| ||||||||||||| |||||||||||| ||||    
T  16170018 acctgggagtgtgttcctcctcaaggtttcaggttcgattctccc 16169974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 24019066 - 24019098
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||| ||||||||||    
T  24019066 agtgtgctcctcctcaaggtcttaggttcgatt 24019098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 27223164 - 27223120
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccgatac 57  Q
    |||||||||| || |||||||||||||||||||| ||||| ||||    
T  27223164 gagtgtgctcttcttcaaggtctcaggttcgattctccccaatac 27223120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 39966135 - 39966175
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||| |||||||||||||||||||||||| || ||||||    
T  39966135 gagtgtactcctcctcaaggtctcaggttcgtttctccccg 39966175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 51281394 - 51281426
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||| ||||    
T  51281394 agtgtgctcctcctcaaggtctcaggtttgatt 51281426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 52336808 - 52336772
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  52336808 gagtgtgctcctccttaagatctcaggttcgattatc 52336772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 14285196 - 14285236
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  14285196 aacctgggagtgtgctcctcctcaaggtctcaggttcgatt 14285236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 25627099 - 25627132
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  25627099 gagtgtgctcctcctcaaggtctcaggttcgatt 25627132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 43442238 - 43442271
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  43442238 gagtgtgctcctcctcaaggtctcaggttcgatt 43442271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 84866 - 84906
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  84866 gagtgtgctcctcctcaaggtctcaagttcgattctccccg 84906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 34984841 - 34984881
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  34984841 aacctgggagtgtgctcctcctcaaggtcttaggttcgatt 34984881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16773843 - 16773882
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  16773843 acctgggagtgtgctcctcctcgaggtctcaggttcgatt 16773882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 3315257 - 3315295
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  3315257 gagtgcgctcctcctcaaggtctcaggttcgattctccc 3315295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 37148062 - 37148096
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggtt 41  Q
    ||||| |||||||||||||||||||||||||||||    
T  37148062 acctgtgagtgtgctcctcctcaaggtctcaggtt 37148096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 87457 - 87424
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  87457 gagtgtgctcctcctcaaggtctcaggtttgatt 87424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 16436659 - 16436692
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||| ||||||||    
T  16436659 gagtgtgctcctcctcaaggtctcatgttcgatt 16436692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 17028298 - 17028265
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  17028298 gagtgtgctcctcctcaaggtctcaggtttgatt 17028265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 24907531 - 24907568
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatcc 50  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  24907531 gagtatgctcctcctcaagttctcaggttcgattatcc 24907568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 25979212 - 25979245
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| |||||||||||||||||||||||||||    
T  25979212 gagtgttctcctcctcaaggtctcaggttcgatt 25979245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 37258400 - 37258367
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||| ||||||||||||    
T  37258400 gagtgtgctcctcctcaaggtttcaggttcgatt 37258367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 8779344 - 8779308
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||||||| |||| |||||||||||||||    
T  8779344 gagtgtgctcctcctcgaggtttcaggttcgattatc 8779308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 16457852 - 16457892
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||||||||||||| |||| ||| ||||||    
T  16457852 gagtgtgctcctcctcaaggtctcatgttcaattctccccg 16457892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 29173532 - 29173568
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||||||| |||| |||||||||||||||    
T  29173532 gagtgtgctcctcctcgaggtttcaggttcgattatc 29173568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 46295139 - 46295179
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  46295139 gagtgtgctcctcctcaaggtctcaggttcgattctccccg 46295179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 23377992 - 23378031
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  23377992 acctgggagtgtgctcctcctcaaggtctcaggttcgatt 23378031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 37109391 - 37109352
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  37109391 acctgggagtgtgctcctcctcaaggtctcaggttcgatt 37109352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 11592193 - 11592151
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  11592193 acctgagagtgtgctcctcctccaggtcttaggttcgattatc 11592151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 7949488 - 7949455
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  7949488 gagtgtgctcctcctcaaggtctcaggttcgatt 7949455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 38869810 - 38869843
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  38869810 gagtgtgctcctcctcaaggtctcaggttcgatt 38869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 49576928 - 49576895
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  49576928 gagtgtgctcctcctcaaggtctcaggttcgatt 49576895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 7292839 - 7292799
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  7292839 aacctgggagtgtgctcctcctcaaagtctcaggttcgatt 7292799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21775960 - 21775920
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  21775960 ctgaaagtgtgctcctcctcaaggtctcaagttcgattatc 21775920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 32992654 - 32992694
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  32992654 gagtgtgctcctcctcaaggtctcaagttcgattctccccg 32992694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 16581728 - 16581771
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||    
T  16581728 aacctgggagtctgctcctcctcaaggtctcaggttctattatc 16581771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 30938253 - 30938214
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  30938253 gagtgtgctcctcctcgaggtctcaggttcgattctcccc 30938214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 37274499 - 37274460
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  37274499 acctgggagtgtgctcctcctcaaggtcttaggttcgatt 37274460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 39509112 - 39509151
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  39509112 gagtgtgctcctcctcgaggtctcaggttcgattctcccc 39509151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 46329200 - 46329239
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  46329200 acctgggagtgtgctcctcctcaaggtatcaggttcgatt 46329239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 46545747 - 46545786
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  46545747 acctgagagtgtgctcctcctcaagatctcagattcgatt 46545786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 51622527 - 51622558
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcga 44  Q
    ||||||||||||||||||||||||||||||||    
T  51622527 gagtgtgctcctcctcaaggtctcaggttcga 51622558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 47044755 - 47044797
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||    
T  47044755 ctgagagtttgctcctcctcgaggtctcaggttcgattctccc 47044797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 2185073 - 2185024
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    |||||| |||||||||||| ||||| ||||||||||||||| || |||||    
T  2185073 aacctgggagtgtgctccttctcaaagtctcaggttcgattctctccgat 2185024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 4249219 - 4249252
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  4249219 gagtgtgctcctcctcaaggtctcaggtttgatt 4249252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 8030238 - 8030205
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||| ||||||||    
T  8030238 gagtgtgctcctcctcaaggtctcaagttcgatt 8030205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 8931121 - 8931076
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    |||||||||||||||||| ||||||||| ||||||||  |||||||    
T  8931121 tgagagtgtgctcctcctgaaggtctcaagttcgatttcccccgat 8931076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 19238611 - 19238542
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccgatacaaccttgggggagctaattcagctt 82  Q
    |||||||||||||||| ||||||| ||||||||| |||||| ||| |  ||||| | ||||||| |||||    
T  19238611 gagtgtgctcctcctcgaggtctcgggttcgattctccccggtaccaatttgggtgggctaatttagctt 19238542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 31759692 - 31759659
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||| |||||||    
T  31759692 gagtgtgctcctcctcaaggtctcagattcgatt 31759659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 31826651 - 31826684
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||| ||||||||    
T  31826651 gagtgtgctcctcctcaaggtctcaagttcgatt 31826684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 44865378 - 44865415
Alignment:
Q  15 gtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  44865378 gtgtgctcctcctcaaggtcttaggttcgattctcccc 44865415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 8325413 - 8325373
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||| |||||||||||| |||||||||| ||||||    
T  8325413 gagtgtgctcatcctcaaggtcttaggttcgattctccccg 8325373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 9693527 - 9693499
Alignment:
Q  18 tgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||    
T  9693527 tgctcctcctcaaggtctcaggttcgatt 9693499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 14451783 - 14451751
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttc 42  Q
    |||||||||||||||||||||||||| ||||||    
T  14451783 tgagagtgtgctcctcctcaaggtcttaggttc 14451751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 21375816 - 21375852
Alignment:
Q  10 tgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||| |||||| |||||||    
T  21375816 tgagagtgtgctcctcctcaagctctcagattcgatt 21375852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 24991574 - 24991602
Alignment:
Q  18 tgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||||||    
T  24991574 tgctcctcctcaaggtctcaggttcgatt 24991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 37720254 - 37720210
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||| |||||||| ||||||||||||| ||||||||||| ||||    
T  37720254 acctgggagtgtgcccctcctcaaggtcccaggttcgattctccc 37720210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 42644948 - 42644908
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    ||||||||||| || ||||||| ||||||||||||||||||    
T  42644948 ctgagagtgtgttcttcctcaaagtctcaggttcgattatc 42644908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 56440443 - 56440483
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||| |||||||| ||||||||| ||||||    
T  56440443 gagtgtgctcctccttaaggtctccggttcgattctccccg 56440483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 2504 - 2465
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  2504 gagtgtgctcctcctcaaggtctcaggttcgattctcccc 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 95012 - 94969
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  95012 aacctgggagtgtgctcctcctcaaggtctcaggttcaattatc 94969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 20501732 - 20501771
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  20501732 acctgagagtgtgctcctccttaaggtctcaggttcgatt 20501771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 19154668 - 19154706
Alignment:
Q  8 cctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  19154668 cctgagagtgtgctcctcctaaaggtctcaggttcgatt 19154706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 14186689 - 14186722
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  14186689 gagtgtgctcctcctcaaggtctcaggttcgatt 14186722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 15048092 - 15048059
Alignment:
Q  16 tgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    ||||||||||||||||||||||||||||||||||    
T  15048092 tgtgctcctcctcaaggtctcaggttcgattatc 15048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 30311348 - 30311381
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  30311348 gagtgtgctcctcctcaaggtctcaggttcgatt 30311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 37788499 - 37788466
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  37788499 gagtgtgctcctcctcaaggtctcaggttcgatt 37788466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11642247 - 11642207
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  11642247 ctgagattgtgatcctcctcaaggtctcaggttcgattatc 11642207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 16354933 - 16354893
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  16354933 aacctgtgagtgtgctcctcctcagggtctcaggttcgatt 16354893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 19716239 - 19716279
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  19716239 gagtgtgctcctcctcaaggtctctggttcgattctccccg 19716279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 44743889 - 44743853
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||||||| ||||||||||||||||||||    
T  44743889 gagtgtgctcctcctcgaggtctcaggttcgattatc 44743853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 53412980 - 53413016
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttc 42  Q
    |||||| ||||||||||||||||||||||||||||||    
T  53412980 aacctgggagtgtgctcctcctcaaggtctcaggttc 53413016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 10445179 - 10445140
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  10445179 acctgggagtgtgctcctcctcgaggtctcaggttcgatt 10445140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 21960587 - 21960626
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  21960587 acctgagagtgtgctcctcctcgaggtctcagattcgatt 21960626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 47454651 - 47454612
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatcccc 52  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  47454651 gagtgtgctcctcctcgaggtctcaggttcgattctcccc 47454612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 14339652 - 14339690
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  14339652 gagtgtgctcctcctcaatgtctcaggttcgattctccc 14339690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 17108932 - 17108894
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  17108932 gagtgtgctcctcctcaaggtctcaggtttgattctccc 17108894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 17765164 - 17765202
Alignment:
Q  8 cctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  17765164 cctgggagtgtgctcctcctcaagatctcaggttcgatt 17765202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 19066484 - 19066522
Alignment:
Q  8 cctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  19066484 cctgggagtgtgctcctcctcaagatctcaggttcgatt 19066522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 54990748 - 54990786
Alignment:
Q  17 gtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  54990748 gtgctcctcctcaaggtctcaggttcgattctcctcgat 54990786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 3427587 - 3427554
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||| |||||||    
T  3427587 gagtgtgctcctcctcaaggtctcagattcgatt 3427554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 8075161 - 8075128
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||| ||||||||||||    
T  8075161 gagtgtgctcctcctcaaggtttcaggttcgatt 8075128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 8170714 - 8170747
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||| |||||||||||||||||||||    
T  8170714 gagtgtgctcctactcaaggtctcaggttcgatt 8170747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 27093395 - 27093362
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  27093395 gagtgtgctcctcctcaaggtctcaggtttgatt 27093362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 28703438 - 28703405
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  28703438 gagtgtgctcctcttcaaggtctcaggttcgatt 28703405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 33899656 - 33899689
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  33899656 gagtgtgctcctcctctaggtctcaggttcgatt 33899689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 39253739 - 39253772
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||| ||||||||||||||||||||    
T  39253739 gagtgtgctcctcttcaaggtctcaggttcgatt 39253772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 44069800 - 44069833
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||| ||||    
T  44069800 gagtgtgctcctcctcaaggtctcaggtttgatt 44069833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 48583490 - 48583449
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattat 48  Q
    |||||||||||| ||||||||||| ||||||| |||||||||    
T  48583490 acctgagagtgtcctcctcctcaaagtctcagattcgattat 48583449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 49452915 - 49452944
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttc 42  Q
    ||||||||||||||||||||||||||||||    
T  49452915 gagtgtgctcctcctcaaggtctcaggttc 49452944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 2667904 - 2667940
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  2667904 gagtgtgctcttcctcgaggtctcaggttcgattatc 2667940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 5499445 - 5499401
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||||||||| ||||||| |||||| ||| ||||||    
T  5499445 ctgagagtgtgctcctccttaaggtctaaggttctattctccccg 5499401  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 9557358 - 9557394
Alignment:
Q  9 ctgagagtgtgctcctcctcaaggtctcaggttcgat 45  Q
    |||||||||||||||||||| || |||||||||||||    
T  9557358 ctgagagtgtgctcctcctcgagatctcaggttcgat 9557394  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 11612341 - 11612373
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgat 45  Q
    ||||||||||||||| |||||||||||||||||    
T  11612341 gagtgtgctcctccttaaggtctcaggttcgat 11612373  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 16900715 - 16900675
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||| ||||||||||| |||||||| ||||||    
T  16900715 gagtgtgctcctcgtcaaggtctcatgttcgattctccccg 16900675  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 24353412 - 24353384
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttc 42  Q
    |||||||||||||||||||||||||||||    
T  24353412 agtgtgctcctcctcaaggtctcaggttc 24353384  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 32320541 - 32320509
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||| ||||||||    
T  32320541 agtgtgctcctcctcaaggtctcatgttcgatt 32320509  T

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Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 45308936 - 45308900
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  45308936 gagtatgctcctcctcgaggtctcaggttcgattatc 45308900  T

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Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 47237005 - 47236965
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccg 53  Q
    ||||||||||||| ||||||||||| |||||||| ||||||    
T  47237005 gagtgtgctcctcttcaaggtctcatgttcgattctccccg 47236965  T

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Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 13080 - 13038
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatccccgat 55  Q
    |||||||||||||||||||||||||||||||||| || |||||    
T  13080 gagtgtgctcctcctcaaggtctcaggttcgattctctccgat 13038  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 10338208 - 10338175
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  10338208 gagtgtgctcctcctcaaggtctcaggttcgatt 10338175  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 23910151 - 23910114
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcga 44  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  23910151 acctgggagtgtgctcctcctcaaggtctcaggttcga 23910114  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 28363979 - 28364015
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28363979 gagtgtgctcctcctcaaggtctcagattcgattatc 28364015  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 34444839 - 34444883
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||    
T  34444839 accttagagtgtgctcctccccaaggtctcaggttcgattctccc 34444883  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 20213077 - 20213116
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  20213077 acctgggagtgtgctcctcctcaatgtctcaggttcgatt 20213116  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 22107100 - 22107139
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  22107100 acctgggagtgtgctcctcctcaatgtctcaggttcgatt 22107139  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 33549140 - 33549179
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  33549140 acctgggagtgtgctcctcctcgaggtctcaggttcgatt 33549179  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 14199981 - 14199948
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||||||||||||| |||||||    
T  14199981 gagtgtgctcctcctcaaggtctcagattcgatt 14199948  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 28841456 - 28841489
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||||||||||||||||||||||| ||||||||    
T  28841456 gagtgtgctcctcctcaaggtctcaagttcgatt 28841489  T

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Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 20003 - 19963
Alignment:
Q  6 aacctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  20003 aacctgggagtatgctcctcctcaaggtctcaggttcgatt 19963  T

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Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 25381 - 25345
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgattatc 49  Q
    |||||||||||| ||||||||||||||||||||||||    
T  25381 gagtgtgctccttctcaaggtctcaggttcgattatc 25345  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 15363 - 15324
Alignment:
Q  7 acctgagagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  15363 acctgggagtgtgctcctcctcgaggtctcaggttcgatt 15324  T

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Target: scaffold0299 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 11570 - 11603
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||||||||||||||| |||||||||||||||||    
T  11570 gagtgtgctcctcctcgaggtctcaggttcgatt 11603  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 2745 - 2712
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgatt 46  Q
    |||| |||||||||||||||||||||||||||||    
T  2745 gagtctgctcctcctcaaggtctcaggttcgatt 2712  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 81597 - 81560
Alignment:
Q  14 agtgtgctcctcctcaaggtctcaggttcgattatccc 51  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  81597 agtgtgctcctcctcaaggtctcagattcgattctccc 81560  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6953 - 6921
Alignment:
Q  13 gagtgtgctcctcctcaaggtctcaggttcgat 45  Q
    |||||||||||||||||| ||||||||||||||    
T  6953 gagtgtgctcctcctcaaagtctcaggttcgat 6921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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