View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_low_2 (Length: 511)
Name: NF1387_low_2
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 99 - 502
Target Start/End: Complemental strand, 49206682 - 49206279
Alignment:
| Q |
99 |
actactatgtcatatgatgatttagtttacatttttacatgcttggtattttttgaatggaattttggcgtttaaaacaaaacttctgacaaggacaatc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49206682 |
actactatgtcatatgatgatttagtttacatttttacatgcttggtattttttgaatggaattttggcgtttaaaacaaaacttctgacagggacaatc |
49206583 |
T |
|
| Q |
199 |
atcacatcgtggttattctttttgtcggtatgcgtaagtcatgaaataacgagttctttaccaatttacagggcctcaaaattttggttatatggtagct |
298 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206582 |
atcacatcgtggttatttttgttgtcggtatgcgtaagtcatgaaataacgagttctttaccaatttacagggcctcaaaattttggttatatggtagct |
49206483 |
T |
|
| Q |
299 |
tggtagctccaatcacttgttaaaatcatgatagttctaacctaacccacatccaccaccaacaacaaaataaattgaaatcaaatcatgcttttcgctt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206482 |
tggtagctccaatcacttgttaaaatcatgatagttctaacctaacccacatccaccaccaacaacaaaataaattgaaatcaaatcatgcttttcgctt |
49206383 |
T |
|
| Q |
399 |
ctactacgtcctttgacaccatccatcccttcaacttttttcctctcctggacatcatccctctcaccgctattgccgtgccgctgctcaaccatcatct |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206382 |
ctactacgtcctttgacaccatccatcccttcaacttttttcctctcctggacaccatccctctcaccgctattgccgtgccgctgctcaaccatcatca |
49206283 |
T |
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| Q |
499 |
ctgc |
502 |
Q |
| |
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|||| |
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| T |
49206282 |
ctgc |
49206279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 49201725 - 49201638
Alignment:
| Q |
96 |
caaactactatgtcatatgatgatttagtttacatttttacatgcttggtatt-ttttgaatggaattttggcgtttaaaacaaaact |
182 |
Q |
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||||||| ||||| |||||| ||||| ||||||||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||| |
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| T |
49201725 |
caaactattatgttatatgacaatttaatttacatttttacatgcatggtatttttttgaatgcacttttggtgtttaaaacaaaact |
49201638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 49190417 - 49190372
Alignment:
| Q |
119 |
tttagtttacatttttacatgcttggtattttttgaatggaatttt |
164 |
Q |
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|||| |||||| |||||||||||||||||||| ||||||||||||| |
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| T |
49190417 |
tttaatttacacttttacatgcttggtattttatgaatggaatttt |
49190372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 26755785 - 26755693
Alignment:
| Q |
118 |
atttagtttacatttttacatgcttggtattttttgaatggaattttggcgtttaaaacaaaacttctgacaaggacaatcatcacatcgtggt |
211 |
Q |
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||||| |||||||||||| |||||||||||||| |||| |||||||| ||| | ||||||||||| || | |||||| | |||||||||||||| |
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| T |
26755785 |
atttaatttacatttttatatgcttggtattttatgaacggaatttttgcgataaaaacaaaactcct-agaaggactaacatcacatcgtggt |
26755693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 37029886 - 37029786
Alignment:
| Q |
108 |
tcatatgatgatttagtttacatttttacatgcttg---gtattttttgaatggaattttggcgtttaaaacaaaacttctgacaaggacaatcatcaca |
204 |
Q |
| |
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||||||||||||||| |||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||| || |||| ||| | ||||||| |
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| T |
37029886 |
tcatatgatgatttaatttacatttttagttgcttgttttttttttttaaatggaattttggcgttcaaaacaaaactcctaacaaagactaacatcaca |
37029787 |
T |
|
| Q |
205 |
t |
205 |
Q |
| |
|
| |
|
|
| T |
37029786 |
t |
37029786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 32594037 - 32594083
Alignment:
| Q |
118 |
atttagtttacatttttacatgcttggtattttttgaatggaatttt |
164 |
Q |
| |
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||||| |||||| |||||||||||||||||||| ||||||||||||| |
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| T |
32594037 |
atttaatttacaattttacatgcttggtattttatgaatggaatttt |
32594083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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