View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_low_5 (Length: 491)
Name: NF1387_low_5
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 464
Target Start/End: Original strand, 36842079 - 36842536
Alignment:
| Q |
7 |
tccaataatatatatcatatgatgagcttccaaaattgcatgacaaatatcctcccaacatttactatgttgaaacatttttccaccttcgagttcgatc |
106 |
Q |
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| T |
36842079 |
tccaataatatatatcatatgatgagcttccaaaattgcatgacaaatatcctcccaacatttactatgttgaaacatttttccaccttcgagttcgatc |
36842178 |
T |
|
| Q |
107 |
tcaggtagcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgccataattaacac |
206 |
Q |
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| T |
36842179 |
tcaggtagcataccatccggtacatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgccataattaacac |
36842278 |
T |
|
| Q |
207 |
ttccattatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaataattggaaa |
306 |
Q |
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| T |
36842279 |
ttccattatcttcattaacatcaatagacatatactgaattgaaatatgcagttcaggataaggtttcaagcagtttccatattgaccaataattggaaa |
36842378 |
T |
|
| Q |
307 |
ccaatcattaagaatgtttccagagagtatcttttaaacaggtatttccacaactccaatgagttcagcaccaagaatatcattatcttttactagaaat |
406 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36842379 |
ccaatcattaagaatgtttccagagagtatcttttgaacaggtatttccacaactccaatgagttcagcaccaagaatatcattatcttttactagaaat |
36842478 |
T |
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| Q |
407 |
tcaagtttgtgagcaggatgagcaacaggaacaagaaaatgttcatcccataaagggt |
464 |
Q |
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| T |
36842479 |
tcaattttgtgagcaggatgagcaacaggaacaagaaaatgttcatcccataaagggt |
36842536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 3120864 - 3120931
Alignment:
| Q |
128 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
195 |
Q |
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||||| |||||||||||||| || || || || ||| ||||||| |||||||||||| |||||||||| |
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| T |
3120864 |
acatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgcc |
3120931 |
T |
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