View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_low_6 (Length: 452)
Name: NF1387_low_6
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 75 - 286
Target Start/End: Complemental strand, 1253218 - 1253007
Alignment:
| Q |
75 |
cgggtcatttggtttcattgaaaacaatgatgggaactaagaaaatgacaacatgaagcattagagtccaataatttgaaaataacatataaacaagtat |
174 |
Q |
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| T |
1253218 |
cgggtcatttggtttcattgaaaacaatgatgggaactaagaaaatgacaacatgaagcattagagtccaataatttgaaaataacatataaacaagtat |
1253119 |
T |
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| Q |
175 |
gtaaatatgcaacattttggaatttctatgcgnnnnnnnctatgtaaccaatcgtttgaaaatttcttctatatcacaaaagactgcattttagcacctc |
274 |
Q |
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| T |
1253118 |
gtaaatattcaacattttggaatttctatgcgaaaaaaactatgtaaccaatcgtttgaaaatttcttgtatatcacaaaagactgcattttagcacctc |
1253019 |
T |
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| Q |
275 |
tgtgggtgtgag |
286 |
Q |
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||| |||||||| |
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| T |
1253018 |
tgtaggtgtgag |
1253007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 341 - 447
Target Start/End: Complemental strand, 1252953 - 1252847
Alignment:
| Q |
341 |
ccattgtattccttgttttgaaagaattatttgatgttaactctgttagtcataagttaacagttggaaaaccttagtttgtctcaaaaacaacaattca |
440 |
Q |
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| T |
1252953 |
ccattgtattccttgttttgaaagaattatttgatgttaactctgttagtcataagttaacagttggaaaaccttagtttgtctcaaaaacaacaattca |
1252854 |
T |
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| Q |
441 |
tctctct |
447 |
Q |
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| T |
1252853 |
tttctct |
1252847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 1253276 - 1253239
Alignment:
| Q |
30 |
ctaaagttactatgcttgtcgtttgcatgtgtcatgtc |
67 |
Q |
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| T |
1253276 |
ctaaagttactatgcttgtcgtttgcatgtgtcatgtc |
1253239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 11006003 - 11006040
Alignment:
| Q |
376 |
gttaactctgttagtcataagttaacagttggaaaacc |
413 |
Q |
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| T |
11006003 |
gttaactctgttagtcataagttaacgattggaaaacc |
11006040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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