View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1387_low_7 (Length: 422)
Name: NF1387_low_7
Description: NF1387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1387_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 96 - 411
Target Start/End: Complemental strand, 6007315 - 6007000
Alignment:
| Q |
96 |
gatcttatagtaaatcctttgttttttgaacttcctgaacaaaagcttcgcaaggttaatctctctggtcattactatatgaaagactcaatgcttttga |
195 |
Q |
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| T |
6007315 |
gatcttatagtaaatcctttgttttttgaacttcctgaacagaagcttcgcaaggttaatctttctggtcattactatatgaaagactcaatgcttttga |
6007216 |
T |
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| Q |
196 |
acatgtgtaagaggtgtgagtttctagaagagattgtgatgttgaaatgctcgttcataactcattatggggttgcttctgctatttgcgagaggccggg |
295 |
Q |
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| T |
6007215 |
acatgtgtaagaggtgtgagtttctagaagagattgtgatgttgaaatgctcgttcataactcattatggggttgcttctgctatttgcgagaggccggg |
6007116 |
T |
|
| Q |
296 |
tttgaagtctctttcttttagtaaattgaggttatttggtattggtaatcacaatatttttattgactcgttggtgagattgaagggcttaacttgtatt |
395 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |
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| T |
6007115 |
tttgaagtctctttcttttagtaaattgaggctatttggtattggtaatcacaatatttttattgactcgttggtgaaattgaaaggcttaacttgtctt |
6007016 |
T |
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| Q |
396 |
gatttgtcgtattcat |
411 |
Q |
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| T |
6007015 |
gatttgtcgtattcat |
6007000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 547873 - 547773
Alignment:
| Q |
138 |
aagcttcgcaaggttaatctctctggtcattactatatgaaagactcaatgcttttgaacatgtgtaagaggtgtgagtttctagaagagattgtgatgt |
237 |
Q |
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| T |
547873 |
aagctccgcaaggttaatttatctggtcattactatataaatgactcattgctttttcacttgtgtcaaagttgtgagtttctcgaagagtttgtgatgt |
547774 |
T |
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| Q |
238 |
t |
238 |
Q |
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| |
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| T |
547773 |
t |
547773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 3438026 - 3438080
Alignment:
| Q |
357 |
attgactcgttggtgagattgaagggcttaacttgtattgatttgtcgtattcat |
411 |
Q |
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| T |
3438026 |
attgacttgttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcat |
3438080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 547641 - 547596
Alignment:
| Q |
355 |
ttattgactcgttggtgagattgaagggcttaacttgtattgattt |
400 |
Q |
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| T |
547641 |
ttattgactcgttgatgtgtttgaagggcttaacttgtcttgattt |
547596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 1527559 - 1527631
Alignment:
| Q |
337 |
ttggtaatcacaatatttttattgactcgttggtgagattgaagggcttaacttgtattgatttgtcgtattc |
409 |
Q |
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| T |
1527559 |
ttggaaatctcaacatttttattcagtcgttggtgaatttgatgggcttaacttgtcttgatttatcatattc |
1527631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 55908104 - 55908152
Alignment:
| Q |
357 |
attgactcgttggtgagattgaagggcttaacttgtattgatttgtcgt |
405 |
Q |
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|||| |||||||||||| ||||| |||||||||||| || ||||||||| |
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| T |
55908104 |
attggctcgttggtgagtttgaatggcttaacttgtcttaatttgtcgt |
55908152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 44244869 - 44244811
Alignment:
| Q |
189 |
cttttgaacatgtgtaagaggtgtgagtttctagaagagattgtgatgttgaaatgctc |
247 |
Q |
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| T |
44244869 |
cttttgaacatgtgtaagaattgtgagtttcttgaagaggttaggatgttgaaatgctc |
44244811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 10615317 - 10615269
Alignment:
| Q |
353 |
ttttattgactcgttggtgagattgaagggcttaacttgtattgatttg |
401 |
Q |
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| T |
10615317 |
ttttattgactcattggtgagtttgaagggcttgacttgtcttgatttg |
10615269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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