View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388-INSERTION-1 (Length: 231)
Name: NF1388-INSERTION-1
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388-INSERTION-1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 27771617 - 27771840
Alignment:
| Q |
8 |
atttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactga |
107 |
Q |
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| T |
27771617 |
atttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactga |
27771716 |
T |
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| Q |
108 |
acaatctgtgacagtagtactnnnnnnngcatctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaact |
207 |
Q |
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| T |
27771717 |
acaatctgtgacagtagtactaaaaaaagcatctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaact |
27771816 |
T |
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| Q |
208 |
tgacaattttcgcggcgattttct |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
27771817 |
tgacaattttcgcggcgattttct |
27771840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 37504077 - 37504182
Alignment:
| Q |
11 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
110 |
Q |
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||||||| |||||||||||||| | ||||||| | ||| ||||| | || |||| ||| | ||| || || |||||||| |||| ||||||||| ||||| |
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| T |
37504077 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
37504176 |
T |
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| Q |
111 |
atctgt |
116 |
Q |
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||||| |
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| T |
37504177 |
ctctgt |
37504182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 12617814 - 12617922
Alignment:
| Q |
8 |
atttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactga |
107 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| ||||||||||| |||||||||| || |
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| T |
12617814 |
atttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcgtcttgaaactcgtttagacaaacaga |
12617913 |
T |
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| Q |
108 |
acaatctgt |
116 |
Q |
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| T |
12617914 |
acaatctgt |
12617922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 37227861 - 37227965
Alignment:
| Q |
11 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
110 |
Q |
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||||||| |||||||||||||| | ||||||| ||||||||||| |||| |||||||||| | | ||||| |||| ||||||||| | |||||| ||||| |
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| T |
37227861 |
taagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaaca |
37227960 |
T |
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| Q |
111 |
atctg |
115 |
Q |
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||||| |
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| T |
37227961 |
atctg |
37227965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 1867112 - 1867028
Alignment:
| Q |
11 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcact |
95 |
Q |
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||||||| |||||||||||| | | ||||||| |||| | |||| | ||||||||||||| | | ||||| |||| ||||||||| |
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| T |
1867112 |
taagccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcact |
1867028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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