View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388-INSERTION-4 (Length: 622)
Name: NF1388-INSERTION-4
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388-INSERTION-4 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 147 - 472
Target Start/End: Original strand, 4460197 - 4460522
Alignment:
| Q |
147 |
tttatgtacttgcttttaatccttgcagttgtgtgttgtagtccatgtttatgttggatctgatgcttctaaaggttgaacatttaatttaattctttct |
246 |
Q |
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| T |
4460197 |
tttatgtacttgcttttaatccttgcagttgtgtgttgtagtccatgtttatgttggatctgatgcttctaaaggttgaacatttaatttaattctttct |
4460296 |
T |
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| Q |
247 |
aaatcaactacatgcataaagattaaaatgaatatgtcacatacattagagatcaatttcaacattgagcaaatttttaagagtaaaataaaataagaaa |
346 |
Q |
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| T |
4460297 |
aaatcaactacatgcataaagattaaaatgaatatgtcacatacattagagatcaatttcaacattgagcaaatttttaagagtaaaataaaataagaaa |
4460396 |
T |
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| Q |
347 |
gtgcaaaagcaaaaactatatatttgatattttgctttctgaattgtgtgcgatgacattacttgtttgttccacagtcttagtggtgaagcaatccatg |
446 |
Q |
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| T |
4460397 |
gtgcaaaagcaaaaactatatatttgatattttgctttctgaattgtgtgcgatgacattacttgttagttcctcagtcttagtggtgaagcaattcatg |
4460496 |
T |
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| Q |
447 |
ttcatattcaaagctctacgacagtt |
472 |
Q |
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| T |
4460497 |
ttcatattcaaagctctacaacagtt |
4460522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 4459661 - 4459805
Alignment:
| Q |
8 |
tatttatggtcacttgctacatcaaattaaacacatcctcattttatgctacttgtgaagaacacatcctcattttaaaattctaaaatgattaaaaaat |
107 |
Q |
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| T |
4459661 |
tatttatggtcacttgctacatcaaattaaacacattctcattttatgctacttgtgaagaacacatcctcattttaaaattctaaaatgattaaaaaca |
4459760 |
T |
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| Q |
108 |
tgttcacaaaattcagcattgtgaagaacacatcctcattttatg |
152 |
Q |
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| T |
4459761 |
agttcacaaaattcagcattgtgaagaacacatcctcattttatg |
4459805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 35013528 - 35013583
Alignment:
| Q |
8 |
tatttatggtcacttgctacatcaaattaaacacatcctcattttatgctacttgt |
63 |
Q |
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| T |
35013528 |
tatttatggtcacttgctacatcaaattaaacacatcctcattttatgctacttgt |
35013583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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