View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1388-INSERTION-5 (Length: 444)
Name: NF1388-INSERTION-5
Description: NF1388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1388-INSERTION-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 55641994 - 55641557
Alignment:
| Q |
8 |
agaccctgttgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatatgcttttatgcaaatgttaggagaat |
107 |
Q |
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| T |
55641994 |
agaccctgttgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatatgcttttatgcaaatgttaggagaat |
55641895 |
T |
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| Q |
108 |
ttgaaaattctctaaccccagaaaaagctataccgtataacttaaggattcaacgacacaaaatatcaaacctcatgacagcaacatggtttggttgcta |
207 |
Q |
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| T |
55641894 |
ttgaaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacgacacaaaatatcaaacctcatggcagcaacatggtttggttgcta |
55641795 |
T |
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| Q |
208 |
tc--tatgtccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttcccccttcccatacgtttagtgcgca |
305 |
Q |
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| T |
55641794 |
tctatatgtccatattctgttagctggtgtgtccatacatttcattacatactcttat-aatcacaaagcttttcccccttcccatacgtttagtgcgca |
55641696 |
T |
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| Q |
306 |
acgtgtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgca |
405 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55641695 |
acgtgtaatgttacataatcaagcttacaaggttttctttttttactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattcatgca |
55641596 |
T |
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| Q |
406 |
cactaattgtttcaaataataagtaaatcatagatatca |
444 |
Q |
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| T |
55641595 |
cactaattgtttcaaataataagtaaatcatagatatca |
55641557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 42662350 - 42661918
Alignment:
| Q |
11 |
ccctgttgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatatgcttttatgcaaatgttaggagaatttg |
110 |
Q |
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| T |
42662350 |
ccctggtgtgctttctccccaaagatgttccatgcacatgtagtttaaaattcatacaacattaatatatattcttttatgcaaatgttaggagaatttg |
42662251 |
T |
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| Q |
111 |
aaaattctctaaccccagaaaaagctataccgtataacttaaggattcaacgacacaaaatatcaaacctcatgacagcaacatggtttggttgctatct |
210 |
Q |
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| T |
42662250 |
aaaattctctaaccccagaaaaagctataccatatagcttaaggattcaacgacacaaaatatcaaacctcatggcagcaacatggtttggttgctatct |
42662151 |
T |
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| Q |
211 |
atgtccatattctgttagatggtgtgtccatacatttcattacatactcttatgaatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtg |
310 |
Q |
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| T |
42662150 |
ctgtccatattctgttagctggtgggtccatacatttcattacatactcttgt-aatcacaaagcttttcccccttcccatacgtttagtgcgcaacgtg |
42662052 |
T |
|
| Q |
311 |
taatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacacta |
410 |
Q |
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| T |
42662051 |
taatgttacataatcaagcttataaggttttctttttttactcaatcactgaatcacaagcttataagctgaatattgtgaaaacaattaatgcacactc |
42661952 |
T |
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| Q |
411 |
attgtttcaaataataagtaaatcatagatatca |
444 |
Q |
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| T |
42661951 |
attgtttcaaataataagtaaatcatagatatca |
42661918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 31036139 - 31036099
Alignment:
| Q |
28 |
cccaaagatgttccatgcacatgtagtttaaaattcataca |
68 |
Q |
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| T |
31036139 |
cccaaagatgttctatgcacatgtagtttaaaattcataca |
31036099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 31036075 - 31036010
Alignment:
| Q |
56 |
taaaattcatacaacattaatatatatgcttttatgcaaatgttaggagaatttgaaaattctctaaccc |
125 |
Q |
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| T |
31036075 |
taaaattcatagaacattaatata----cttttatgcaaatgctaggagaatttgatgattctttaaccc |
31036010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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