View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_high_10 (Length: 468)
Name: NF13880_high_10
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 48447171 - 48447555
Alignment:
| Q |
18 |
gaaactgtgtttaactgttactcatttgttaatttgttttttgaagtgttacctttgttacatgtctgaattatcttttgcttactttgttattggatgt |
117 |
Q |
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| T |
48447171 |
gaaactgtgtttaactgttactcatttgttaatttgttttttgaagtgttacctttgttacatgtctgaattatcttttgcttactttgttattggatgt |
48447270 |
T |
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| Q |
118 |
ttgtttctttgttcattgtttagttaaattcaatccaaagcttgcttgcttggtgtaaatctgcagtggactttgggaaggcaaaatctgtcgttgccgt |
217 |
Q |
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| T |
48447271 |
ttgtttctttgttcattgtttagttaaattcaatccaaagcttgcttgctgggtgtaaatctgcagtggactttgggaaggcaaaatctgtcgttgccgt |
48447370 |
T |
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| Q |
218 |
taaagctagttgtacccggtgggctttgttctttacattgtcatctttgttggttagttcattgtattttaaaaataattgtgacaatgaagatttttat |
317 |
Q |
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| T |
48447371 |
taaagctagttgtaccc-gagggctttgttctttacattgtcatctttgttggttagttcattgtattttaaaaataattgtgacaatgaagatttttat |
48447469 |
T |
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| Q |
318 |
agtgcttttagcctagtatattcattctaatacttgttttccaaacttcaatatcacttgttaatgttaagtattaaaacaagtaa |
403 |
Q |
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| T |
48447470 |
agtgcttttagcctagtatattcattctaatacttgttttccaaacttcaatatcacttgttaatgttaagtattaaaacaagtaa |
48447555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 18687497 - 18687557
Alignment:
| Q |
86 |
aattatcttttgcttactttgttattggatgtttgtttctttgttcattgtttagttaaattcaa |
150 |
Q |
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| T |
18687497 |
aattctcttttgcttactctgttactgg----ttgtttctttgttcattgtttcgttaaattcaa |
18687557 |
T |
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