View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_high_14 (Length: 430)
Name: NF13880_high_14
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 172 - 414
Target Start/End: Complemental strand, 10400521 - 10400279
Alignment:
| Q |
172 |
acatcaatctttgataattattctgaggtgaaaccctctcaactatattatacattagttgagaggagtacctaatagaaaacttgcaagttgttgcacc |
271 |
Q |
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| T |
10400521 |
acatcaatctttgataattattctgaggtgaaaccctctcaactatattatacattagttgagaggagtacctaatagaaaacttgcaatttgttgcacc |
10400422 |
T |
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| Q |
272 |
aatttccatgtcatagtcacatgatgttcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgtatg |
371 |
Q |
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| T |
10400421 |
aatttccatgtcatagtcacatgatgttcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgtatg |
10400322 |
T |
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| Q |
372 |
ctttgccagaactgttaattaaatctagcaatttatgattcat |
414 |
Q |
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| T |
10400321 |
ctttgccagaactattaattaaatctagcaatttatgattcat |
10400279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 10400778 - 10400600
Alignment:
| Q |
20 |
gaggaaacctagaaaccagtggcacgatccttatttcaaatgcaatgaataaaatgttatagaaactaaaggttttcaatccttatagataattgatgat |
119 |
Q |
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| T |
10400778 |
gaggaatcctagaaaccagtggcacgatccttatttcaaatgcaatgaataaaatgttatagaaactaaaggttttcaatccttatagataattgatgat |
10400679 |
T |
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| Q |
120 |
tgctttgtatatattttacaaataaagtgacgtacatttccatagttctatgacatcaatctttgataattattctgag |
198 |
Q |
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| T |
10400678 |
tgctttgtatatattttacaaataaagtgacgtacatttccatagttctatgacatcaatctttgataattattctgag |
10400600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 11005520 - 11005453
Alignment:
| Q |
302 |
tctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
369 |
Q |
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| T |
11005520 |
tctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgagtcatgta |
11005453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 11015848 - 11015781
Alignment:
| Q |
302 |
tctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
369 |
Q |
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| T |
11015848 |
tctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgagtcatgta |
11015781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 21198868 - 21198796
Alignment:
| Q |
297 |
gttcttctgttaaggtagcaccaatagcacatctaatcacaaaagatccttcaacctcaccatgactcatgta |
369 |
Q |
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| T |
21198868 |
gttcctctgttaaagttgctccaatagcacacctaatcacaaaaactccttcaaccacagcatgcgtcatgta |
21198796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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