View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_high_19 (Length: 356)
Name: NF13880_high_19
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 52476585 - 52476933
Alignment:
| Q |
1 |
gtatgtgcattaatgacaatgaaaatagatcaatgtgtgaaatggtcgatcaagatatatagttattgtggacgaagggaatataacatgtaccttgagt |
100 |
Q |
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| T |
52476585 |
gtatgtgcattaatgacaatgaaaatagatcaatgtgtgaaatggtcgatcaagatatatagttattgtggacgaagggaatataacatgtaccttgagt |
52476684 |
T |
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| Q |
101 |
gcttcatcttgtatgatgacaagggatccacatgtccaggtacttgtagcttcagttacaagttcatcaaacagttgaacaaaggaaggcaaagaatgag |
200 |
Q |
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| T |
52476685 |
gcttcatcttgtatgatgacaagggatccacatgtccaggtacctgtagcttcagttacaagttcatcaaacagttgaacaaaggaaggcaaagaatgag |
52476784 |
T |
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| Q |
201 |
gcgagaacaaactcaagagacggctacgaatgagtttgtgatgatgctcagctgcacatagcaagctatcgggacccaagagcttggagattgactttat |
300 |
Q |
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| T |
52476785 |
gcgagaacaaactcaagagacggctacgaatgagtttgtgatgatgctcagctgcacatagcaagctatcgggacccaagagcttggagattgactttat |
52476884 |
T |
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| Q |
301 |
gtacttctttgagaatttccctccctcgtttcttagaatcacctttgct |
349 |
Q |
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| T |
52476885 |
gtacttctttgagaatttccctccctcgtttcttagaatcacctttgct |
52476933 |
T |
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