View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13880_high_2 (Length: 711)

Name: NF13880_high_2
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13880_high_2
NF13880_high_2
[»] chr8 (4 HSPs)
chr8 (18-349)||(38421334-38421665)
chr8 (391-693)||(38421702-38422015)
chr8 (30-79)||(11592240-11592289)
chr8 (43-90)||(38602430-38602476)
[»] chr5 (1 HSPs)
chr5 (60-90)||(14980628-14980658)
[»] chr4 (2 HSPs)
chr4 (53-83)||(1133040-1133070)
chr4 (52-90)||(27043751-27043789)
[»] chr7 (1 HSPs)
chr7 (42-83)||(19302491-19302531)
[»] chr6 (1 HSPs)
chr6 (42-83)||(33089607-33089648)
[»] chr3 (1 HSPs)
chr3 (57-90)||(26990146-26990179)
[»] chr1 (1 HSPs)
chr1 (57-90)||(6292608-6292641)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 38421334 - 38421665
Alignment:
Q  18 ataagttatcttatttctataagctctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaaacatacccgtaaacccaataaccaaat 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421334 ataagttatcttatttctatatgctctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaaacatacccgtaaacccaataaccaaat 38421433  T
Q  118 tcagagcttcatgtaatccaagagtgctatttaggagagtagtatgcatatagtgaaatggaaatttattataagtttgtggtggagaagaaagagaagg 217  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  38421434 tcagagcttcatgtaatccaagactgctatttaggagagtattatgcgtatagtgaaatgaaaatttattataagtttgtggtggaaaagaaagagaagg 38421533  T
Q  218 caataatataatgtatgcatataaaacagtaaaatttgtagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatactttaacaaacca 317  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421534 caataatataatgtatgcatataaaacagtaaaatttggagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatactttaacaaacca 38421633  T
Q  318 tggattgtgttgaaatagcatgattcataagg 349  Q
    ||||||||||||||||||||||||||||||||    
T  38421634 tggattgtgttgaaatagcatgattcataagg 38421665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 391 - 693
Target Start/End: Original strand, 38421702 - 38422015
Alignment:
Q  391 ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421702 ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca 38421801  T
Q  491 agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgaaaaagagatttgctcaaatatacctgaaggatc-----------t 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||           |    
T  38421802 agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgagaaagagatttgctcaaatatacctgaaggatctttttttttttt 38421901  T
Q  580 tttaatttataagcagcattgttttatcatttctataagtaatccaacctaactaactaagcatcttaactcccctctcaattaactactatatcataac 679  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421902 tttaatttataagcagcattgttttatcatttctataagtaatccaacctaactaactaagcatcttaactcccctctcaattaactactatatcataac 38422001  T
Q  680 cgttttagccagta 693  Q
    ||||||||||||||    
T  38422002 cgttttagccagta 38422015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 11592289 - 11592240
Alignment:
Q  30 atttctataagctctcacaaacacttgtgtcagtagataagctcaaataa 79  Q
    |||||| ||||||||| |||||| |||||| |||||||||||||||||||    
T  11592289 atttctttaagctctctcaaacagttgtgttagtagataagctcaaataa 11592240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 38602430 - 38602476
Alignment:
Q  43 ctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaa 90  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  38602430 ctcacaaa-acttatgtcagtagataagctcaaataagtcaatccaaa 38602476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 14980628 - 14980658
Alignment:
Q  60 cagtagataagctcaaataagtcattccaaa 90  Q
    |||||||||||||||||||||||||||||||    
T  14980628 cagtagataagctcaaataagtcattccaaa 14980658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 83
Target Start/End: Original strand, 1133040 - 1133070
Alignment:
Q  53 cttgtgtcagtagataagctcaaataagtca 83  Q
    |||||||||||||||||||||||||||||||    
T  1133040 cttgtgtcagtagataagctcaaataagtca 1133070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 27043789 - 27043751
Alignment:
Q  52 acttgtgtcagtagataagctcaaataagtcattccaaa 90  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  27043789 acttatgtcagtagataagctcaaataagtcaatccaaa 27043751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 19302531 - 19302491
Alignment:
Q  42 tctcacaaacacttgtgtcagtagataagctcaaataagtca 83  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  19302531 tctcacaaa-acttatgtcagtagataagctcaaataagtca 19302491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 33089607 - 33089648
Alignment:
Q  42 tctcacaaacacttgtgtcagtagataagctcaaataagtca 83  Q
    ||||||||| || | |||||||||||||||||||||||||||    
T  33089607 tctcacaaatacatatgtcagtagataagctcaaataagtca 33089648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 26990179 - 26990146
Alignment:
Q  57 tgtcagtagataagctcaaataagtcattccaaa 90  Q
    ||||||||||||||||||||||||||| ||||||    
T  26990179 tgtcagtagataagctcaaataagtcaatccaaa 26990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 6292608 - 6292641
Alignment:
Q  57 tgtcagtagataagctcaaataagtcattccaaa 90  Q
    ||||||||||||||||||||||||||| ||||||    
T  6292608 tgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University