View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_high_20 (Length: 331)
Name: NF13880_high_20
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 36120081 - 36119871
Alignment:
| Q |
6 |
tatactgaacactagaattactgcaccaatagacaagaaaacaactgaaagtctagggatggtgt--------ctgtttccttggaagagttcagccatt |
97 |
Q |
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| T |
36120081 |
tatactgaacaatagaattactgcaacaatagacaagaaaacaactgaaagtctagacatcatttaaaatcctctgtttccttggaagagttcagccatt |
36119982 |
T |
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| Q |
98 |
cgacaattaattcagataacttcatttaaaatgaaacctagggatggtgatgtctgtttccttggaagagtaaaaccattcaaatcgaaaatatgaacat |
197 |
Q |
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| T |
36119981 |
cgacaattaattcagatagcttcatttaaaatgaaacctagggatggtgatgtctgtttccttggaagagtacaaccattcaaatcgaaaatatgaactt |
36119882 |
T |
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| Q |
198 |
caattgtatat |
208 |
Q |
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| T |
36119881 |
caattgtatat |
36119871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 36119830 - 36119716
Alignment:
| Q |
204 |
tatatgtcactaggtttcataatcctaaaaactcgtaaccaatagagacaagtcatca---gattgaagtagtcagcactcaccatactgatataaacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36119830 |
tatatgtcactaggtttcataatcctaaaaactcgtaaccaatagagacaagtcatcatcagattgaagtagtcagcactcaccatactgatataaacat |
36119731 |
T |
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| Q |
301 |
cattgaggaataaat |
315 |
Q |
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| T |
36119730 |
cattgaggaataaat |
36119716 |
T |
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