View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_high_28 (Length: 227)
Name: NF13880_high_28
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22304377 - 22304157
Alignment:
| Q |
1 |
aagagtttatgcgttggttgattataaaactcatttaacaagcgaaaatcagttttataaagaattcatttgattaagcatcatacgtcttcaactaact |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
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| T |
22304377 |
aagagtttatgctttggttgattataaaactcatttaacaagcgaaaatcagttttatatagaattcgtttgattaagcatcatacgtgttcaactaact |
22304278 |
T |
|
| Q |
101 |
atggtgatgatcaagcgtcaccaagaacaaagttaatatcataacaatattctatcaaccctttttacaagcgaaaaagaaagcatatatagttttctgt |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
22304277 |
atggtgatgatcaagcatcaccaagaacaaagttaatatcataacaagattcgatcaaccctttttgcaagcgaaa---aaagcatatatagttttctgt |
22304181 |
T |
|
| Q |
201 |
tcaaattaacttaaacaagcgatg |
224 |
Q |
| |
|
||||||||| |||||||||||||| |
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| T |
22304180 |
tcaaattaatttaaacaagcgatg |
22304157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30142849 - 30142625
Alignment:
| Q |
1 |
aagagtttatgcgttggttgattataaaactcatttaacaagcgaaaatcagttttataaagaattcatttgattaagcatcatacgtcttcaactaact |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
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| T |
30142849 |
aagagtttatgctgtggttgattataaaactcatttaacaagcgaaaatcagttttatatagaattcgtttgattaagcatcatacgtgttcaactaact |
30142750 |
T |
|
| Q |
101 |
atggtgatgatcaagcgtcaccaagaacaaagttaatatcataacaatattctatcaaccctttttacaagcga-aaaagaaagcatatatagttttctg |
199 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
30142749 |
atggtgatcattaagcgtcaccaagaacaaagttaatatcataacaagattcgatcaaccctttttgcaagcgaaaaaaaaaagcatatatagttttctg |
30142650 |
T |
|
| Q |
200 |
ttcaaattaacttaaacaagcgatg |
224 |
Q |
| |
|
|||||||||| |||||||||||||| |
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|
| T |
30142649 |
ttcaaattaatttaaacaagcgatg |
30142625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 19802808 - 19802679
Alignment:
| Q |
1 |
aagagtttatgcgttggttgattataaaactcatttaacaagcgaaaatcagttttataaagaattcatttgattaagcatcatacgtcttcaactaact |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
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| T |
19802808 |
aagagtttatgttttggttgattataaaactcatttaacaagcgaaaatcagttttatatagaattcgtttgattaagcatcatacgtgttcaactaact |
19802709 |
T |
|
| Q |
101 |
atggtgatgatcaagcgtcaccaagaacaa |
130 |
Q |
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|
|||||||||||||||||||||||||||||| |
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|
| T |
19802708 |
atggtgatgatcaagcgtcaccaagaacaa |
19802679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 19800921 - 19800829
Alignment:
| Q |
128 |
caaagttaatatcataacaatattctatcaaccctttttacaagcgaaaaagaaagcatatatagttttctgttcaaattaacttaaacaagcgatg |
224 |
Q |
| |
|
|||||||| ||| ||||||| ||| ||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19800921 |
caaagttattattataacaag-ttcgatcaaccctttttgcaagtgaaaaa---agcatatatagttttctgttcaaattaatttaaacaagcgatg |
19800829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30741862 - 30742084
Alignment:
| Q |
1 |
aagagtttatgcgttggttgattataaaactcatttaacaagcgaaaatcagttttataaagaattcatttgattaagcatcatacgtcttcaactaact |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||| |
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| T |
30741862 |
aagagtttatgctttggttgattataaaactcatttaacaagcgaaaatcggttttatatagaattcgtttgattaagcatcatacgtgttcaactaact |
30741961 |
T |
|
| Q |
101 |
atggtgatgatcaagcgtcaccaagaacaaagttaatatcataacaatattctatcaaccctttttacaagcgaaaaagaaagcatatatagttttctgt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||| |||| |||||||| |
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| T |
30741962 |
atggtgatgatcaagcttcaccaagaacaaagttaatatcataacaagattcgatcaaccctttttgcaagcg-aaaagaaagcatgtatatttttctgt |
30742060 |
T |
|
| Q |
201 |
tcaaattaacttaaacaagcgatg |
224 |
Q |
| |
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||||||||| ||| ||||| |||| |
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|
| T |
30742061 |
tcaaattaatttacacaagtgatg |
30742084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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