View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_high_5 (Length: 583)
Name: NF13880_high_5
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_high_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 53426109 - 53426674
Alignment:
| Q |
1 |
tcagggaagacagacacaactccaggttgttgagcaattgagtttgcttcactttttgataaacgagctgcaaagcctgagaatccgtatttgtagttat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
53426109 |
tcagggaagacagacacaactccaggttgttgagcaattgagtttgcttcactttttgataaacgagccgcaaagcctgagaatccgtgtttgtagttat |
53426208 |
T |
|
| Q |
101 |
gtactagagctttctcattcctaaatgattcacatcaccaataattaatcacattttacaatactagctaattgatcgtgatatatatattcaattcaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53426209 |
gtactagagctttctcattcctaaatgattcacatcaccaataattaatcacattttacaatactagctaattgatcgtgatatatatattccattcaat |
53426308 |
T |
|
| Q |
201 |
taattaagtacctttttaacactgtgtttaaaatatgggcatgatcttcgcgaagggaaccattagctgaatgtgcagctcccatatacacaatataaac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
53426309 |
taattaagtacctttttaacactgtgtttaaaatatgggcatgatcttcgcgaagggaaccattagttgaatgtgaagctcccatatacacaatataaac |
53426408 |
T |
|
| Q |
301 |
ttgattgtcattctttgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcct |
400 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53426409 |
ttgattgtcattctctgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcct |
53426508 |
T |
|
| Q |
401 |
ttcatgtttagtattctcttaaattgagcttagctttgatggtgttcaataaattgatgaagagtatgcatgttagctccccgcgcacacaaatatataa |
500 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53426509 |
ttcatgtttagtattctcttatattgagcttagctttgatggtgttcaataaattgatgaagagtatgcatgttagctccccgcgcacacaaatatataa |
53426608 |
T |
|
| Q |
501 |
gaagcaatcggtctaaaaaagttataataagttggtgcttatgtcagcattgaattatgagttatg |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53426609 |
gaagcaatcggtctaaaaaagttataataagttggtgcttatgtcagcattgaattatgagttatg |
53426674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 410
Target Start/End: Original strand, 53434279 - 53434678
Alignment:
| Q |
10 |
acagacacaactccaggttgttgagcaattgagtttgcttcactttttgataaacgagctgcaaagcctgagaatccgtatttgtagttatgtactagag |
109 |
Q |
| |
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|||||||||||||||||||||||||||| | | ||| ||||| |||||||||| || ||||| |||||||||||||||||||| ||||| |||||||||| |
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|
| T |
53434279 |
acagacacaactccaggttgttgagcaactaaatttacttcattttttgataagcgggctgcgaagcctgagaatccgtatttatagttgtgtactagag |
53434378 |
T |
|
| Q |
110 |
ctttctcattcctaaa----tgattcac--atcaccaataa------ttaatcacattttacaa---tactagctaattgatcgtgatat-atatattca |
193 |
Q |
| |
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|||| ||||||||||| | |||||| |||| |||||| |||||||||||| |||| |||||||||||||| |||| |||||| |
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|
| T |
53434379 |
ctttttcattcctaaaccattcattcacatatcatcaataaaattagttaatcacatttcacaatagtactagctaattga-----atatcatatat--- |
53434470 |
T |
|
| Q |
194 |
attcaattaattaagtacctttttaacactgtgtttaaaatatgggcatgatcttcgcgaagggaaccattagctgaatgtgcagctcccatatacacaa |
293 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||| || ||||||||||| ||||||||||||| ||||| | ||||||||||||||||| |
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| T |
53434471 |
-----attaatta----ccttcttaacactgtgcttaaaacataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaa |
53434561 |
T |
|
| Q |
294 |
tataaacttgattgtcattctttgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactga |
393 |
Q |
| |
|
|||||| |||||| ||||||||||||| | || |||| |||| |||||||||||||| | |||||||||||||||||| | || || ||||| || || |
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|
| T |
53434562 |
tataaatttgattttcattctttgatttattagctaagtatgaccttgactctccaagaagaaggaagagtgagtaaaacactaatatcaataaaattgg |
53434661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 26099219 - 26099346
Alignment:
| Q |
10 |
acagacacaactccaggttgttgagcaattgagtttgcttcactttttgataaacgagctgcaaagcctgagaatccgtatttgtagttatgtactagag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
26099219 |
acagacacaactccaggttgttgagcaattgaatttgcttcattttttgataaacgagctgcgaagcctgagaatccgtatttgtagttgtgtactagag |
26099318 |
T |
|
| Q |
110 |
ctttctcattcctaaatgattcacatca |
137 |
Q |
| |
|
|||| ||||||||||| |||||||||| |
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|
| T |
26099319 |
ctttttcattcctaaaccattcacatca |
26099346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 48370958 - 48370819
Alignment:
| Q |
10 |
acagacacaactccaggttgttgagcaattgagtttgcttcactttttgataaacgagctgcaaagcctgagaatccgtatttgtagttatgtactagag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||| || |||||||||||||||| |
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|
| T |
48370958 |
acagacacaactccaggttgttgagcaattgaggctgcttcatttttcgataaacgagctgcgaagcctgagaatccgtgcttatagttatgtactagag |
48370859 |
T |
|
| Q |
110 |
ctttctcattcctaaatgattcacatcaccaataattaat |
149 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||||||||| |
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|
| T |
48370858 |
ctttttcattcctaaacaattcacatcaacaataattaat |
48370819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 198 - 417
Target Start/End: Original strand, 26099395 - 26099611
Alignment:
| Q |
198 |
aattaattaagtacctttttaacactgtgtttaaaatatgggcatgatcttcgcgaagggaaccattagctgaatgtgcagctcccatatacacaatata |
297 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||| ||| ||||||||| |||||||||||||||| ||||| || ||||||| ||||||||||| |
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|
| T |
26099395 |
aattaattaattaccttcttaacaccatgtttaaaacatgatcatgatctttacgaagggaaccattagttgaatccacacctcccatgtacacaatata |
26099494 |
T |
|
| Q |
298 |
aacttgattgtcattctttgattgaggagttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaattt |
397 |
Q |
| |
|
||||||||| |||||||||| ||||| || ||| |||||| || |||||||||| ||||||||| ||||||||| |||||| ||| | || || |||| |
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|
| T |
26099495 |
aacttgattttcattctttggttgagtagctaaagatgattttaactctccaag---aaggaagagagagtaaaatgttagtatcaagaaaattggattt |
26099591 |
T |
|
| Q |
398 |
cctttcatgtttagtattct |
417 |
Q |
| |
|
| |||||||||||| ||||| |
|
|
| T |
26099592 |
cttttcatgtttagcattct |
26099611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 53321819 - 53321948
Alignment:
| Q |
13 |
gacacaactccaggttgttgagcaattgagtttgcttcactttttgataaacgagctgcaaagcctgagaatccgtatttgtagttatgtactagagctt |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||| | |||||||||| ||||||||||| | ||||||||| |||| || ||| |
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|
| T |
53321819 |
gacacaactccaggttgttgagctattgagtttgcttcatgttttgatagaagagctgcaaaacctgagaatccatgtttgtagttgtgtattaaagccc |
53321918 |
T |
|
| Q |
113 |
tctcattcctaaatgattcacatcaccaat |
142 |
Q |
| |
|
|||| ||||||||| |||||||||| |||| |
|
|
| T |
53321919 |
tctcgttcctaaataattcacatcatcaat |
53321948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 53310874 - 53311194
Alignment:
| Q |
5 |
ggaagacagacacaactccaggttgttgagcaattgagtttgcttcactttttgataaacgagctgcaaagcctgagaatccgtatttgtagttatgtac |
104 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||||||| ||||| |||| ||||||||||||| |||||| || ||||| |
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|
| T |
53310874 |
ggaagacagccacaactccatgttgatgagcaattgagtttgcttcattttttaataa-------------cctgagaatccgtgtttgtaattgtgtac |
53310960 |
T |
|
| Q |
105 |
tagagctttctcattcct---aaatgattcacatcaccaataattaat---cacattttacaatactagctaattgatcgtg--atatatatattcaatt |
196 |
Q |
| |
|
||||| || |||||||| |||| ||||| || | ||||||||||| ||||||| | |||||||||||||||||| || |||||||||||||| | |
|
|
| T |
53310961 |
gagagccttttcattccttataaataattcatatgatcaataattaataatcacatttcaaaatactagctaattgatcatgttatatatatattcaact |
53311060 |
T |
|
| Q |
197 |
ca---attaattaagtacctttttaacactgtgtttaaaatatgggcat----gatcttcgcgaagggaaccattagctgaatgtgcagctcccatatac |
289 |
Q |
| |
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| |||| ||| || ||| ||||||| |||||||||| |||| || ||| || |||||| || ||||| ||||| |||||||||||| ||| |
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|
| T |
53311061 |
gattaattagttagttaacttcttaacaccgtgtttaaaacatggatatatatgatattttggaagggtactattagttgaatctgcagctcccatgtac |
53311160 |
T |
|
| Q |
290 |
acaatataaacttgattgtcattctttgattgag |
323 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| |
|
|
| T |
53311161 |
acaatataaacttgtttgtcattctccgattgag |
53311194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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