View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_11 (Length: 439)
Name: NF13880_low_11
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 46187952 - 46187529
Alignment:
| Q |
1 |
catggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtgaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187952 |
catggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtgaaac |
46187853 |
T |
|
| Q |
101 |
gagatagtttgataagagagtgaagttggtgcattcattgaagatagagacatggtttggcttggaagtagcttccattactatggcaataatggtgctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187852 |
gagatagtttgataagagagtgaagttggtgcattcattgaagatagagacatggtttggcttggaagtagcttccattactatggcaataatggtgctc |
46187753 |
T |
|
| Q |
201 |
agctcagtttcgaggcttatgctcaagaagctaggcctatga-ataaataaatagatggggaaaataacaactaatgagaaaaacgaaatctctgacaag |
299 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46187752 |
agctcagtttcgaggcttatgctcaagaagctaggtctatgatatgaataaatagatggggaaaataacaactaatgagaaaatcgaaatctctgacaag |
46187653 |
T |
|
| Q |
300 |
agagactttcaaaagttgtgtttgaattcttaaccatgaatggagtgattcaatgagaaggaaaaggtatggtaaaaaatatttccaacgtatctttact |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46187652 |
agagactttcaaaagttgtgtttgaattcttaaccatgaatggagtgattcaatgagaaggaaaaggtatggtaaaaaatatttccaacgtatctttact |
46187553 |
T |
|
| Q |
400 |
tgtttcggggacaggtgaggttag |
423 |
Q |
| |
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| T |
46187552 |
tgtttcggggacaggtgaggttag |
46187529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 32833231 - 32833393
Alignment:
| Q |
13 |
gttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtgaaacgagatagtttga |
112 |
Q |
| |
|
||||||||||||| |||| |||||| |||| | |||||||||| ||||| |||||| ||||||||||||||| ||||| | ||||| ||||| |||||| |
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| T |
32833231 |
gttcatagttttgaagaagtaagaaagcttgagcaaatgttgcaagtgtgatgctacaaagccataggaaatatgagagttttgaaaggagatggtttga |
32833330 |
T |
|
| Q |
113 |
taagagagtgaagttggtgcattcattgaagatagagacatggtttggcttggaagtagcttccat |
178 |
Q |
| |
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|| ||||||||||||||||||||||||| || | |||||||| ||||||| ||||||||||| |
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| T |
32833331 |
aaaaagagtgaagttggtgcattcattgac---agggtcatggttttgcttggatgtagcttccat |
32833393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 32846512 - 32846674
Alignment:
| Q |
13 |
gttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtgaaacgagatagtttga |
112 |
Q |
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||||||||||||| |||| |||||| | || | |||||||||| ||||| |||||| ||||||||||||||| ||||| | ||||| ||||| |||||| |
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| T |
32846512 |
gttcatagttttgaagaagtaagaaagtttgagcaaatgttgcaagtgtgatgctacaaagccataggaaatatgagagttttgaaaggagatggtttga |
32846611 |
T |
|
| Q |
113 |
taagagagtgaagttggtgcattcattgaagatagagacatggtttggcttggaagtagcttccat |
178 |
Q |
| |
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|| ||||||||||||||||||||||||| || | |||||||| ||||||| ||||||||||| |
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| T |
32846612 |
aaaaagagtgaagttggtgcattcattgac---agggtcatggttttgcttggatgtagcttccat |
32846674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 17931426 - 17931287
Alignment:
| Q |
2 |
atggaacattggttcatagttttggagaaataagaatgcttcaacaaatgttgctagtgttatgctagaaagccataggaaatgtgagaagtgtgaaacg |
101 |
Q |
| |
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|||||| ||| ||||||||||||| |||| | |||| |||| | |||||||||| ||| | |||||| |||| ||||||||| ||||| | ||||| | |
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| T |
17931426 |
atggaagattagttcatagttttgaagaagtgagaaagcttgagcaaatgttgcaagtatgatgctacaaaggaataggaaatatgagagttttgaaagg |
17931327 |
T |
|
| Q |
102 |
agatagtttgataagagagtgaagttggtgcattcattga |
141 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
17931326 |
agatggtttgataagagagtgaagttggtgcattcattga |
17931287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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