View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_12 (Length: 434)
Name: NF13880_low_12
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 441803 - 441470
Alignment:
| Q |
11 |
ttatactaaattctacgatttgaacttgaaaatttattacccaaaaaacgaaaacatttcagatttaaacaagttgagttcagttggacccgatctcgaa |
110 |
Q |
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| T |
441803 |
ttatactaaattctacgatttgaacttgaacatttattacccaaaaa-cgaaaacatttcagatttgaacaagttgagttcagttggacccgatctcgaa |
441705 |
T |
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| Q |
111 |
taaattgaaataaaataaaatttagcttcatttggattatcgaatcagattgaatgggtcacatgaaccctaaaacatctttaattgagaagtctttttc |
210 |
Q |
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| T |
441704 |
taaattgaaataaaatagaagttagcttcatttggattatcgaatcagattgaatgggtcacctgtaccctaaaacatctttaattgagaagtctttttc |
441605 |
T |
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| Q |
211 |
aaaatttagattttggtataaaggtaacacaaaactcatgtttagttgtgttcatgggtgtggatcggcatacaaacctagtgagtcaacccgactcaac |
310 |
Q |
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| T |
441604 |
aaaatttagattttggtataaaggtaacacacaactcatgtttagttgtgttcatgggtgtggatcggcatacaaacctagtgagtcaacccgactcaac |
441505 |
T |
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| Q |
311 |
ccacattacctaagcctaattatttatggatctat |
345 |
Q |
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| T |
441504 |
ccacattgcctaagcctaattatttatggatctat |
441470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 341 - 418
Target Start/End: Complemental strand, 441022 - 440945
Alignment:
| Q |
341 |
tctattcttattattggtgggctagtacatattttttagattgaaggtgtctaatatgtgttgttatcacgggtttcc |
418 |
Q |
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| T |
441022 |
tctattcttattattggtgggctagtacatattttttagattgaaggtgtataatatgtgttgttatcacgggtttcc |
440945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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