View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_15 (Length: 423)
Name: NF13880_low_15
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 130 - 409
Target Start/End: Complemental strand, 40707589 - 40707310
Alignment:
| Q |
130 |
aaagattgggtattaagtgaatgaacattttattatagatttgtaaactaaacgcgtcattatttctaaaagttacgttcaaaattcttttgtgtaaatc |
229 |
Q |
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| T |
40707589 |
aaagattggacactaagtgaatgaacgatttattatagatttgtcaattaaacgcatcattatttataagagttatgctcaaaattcttttgtgtaaatc |
40707490 |
T |
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| Q |
230 |
ttaaaaaggtcacaaaaaagagaaatacgtgaaaatgataaactaattgtaaatttactatataagtagatactatgcattatgaaaatcacttatacaa |
329 |
Q |
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| T |
40707489 |
tcaaaaaggtcacaaaaaagagaaatacgtgaaaatgataaattaattgtgaatttactatataagtagatactatgcattatgaacatcacttatatag |
40707390 |
T |
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| Q |
330 |
taaattcgcaattaggttaccattttcatctatttctcttttttaacggcaaaagcattgaattaaaaacaagagtttga |
409 |
Q |
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| T |
40707389 |
taaattcgcaattaggttaccattttcatctatttctcttttttaacggcaaaagcattgaattaaaaacaagagtttga |
40707310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 40722975 - 40722749
Alignment:
| Q |
11 |
cacagatacataagatacctttcaactaattgagtcaacacatcattcatagaagagacactaacctttctttatcttggtcaaaaaccatttccaagac |
110 |
Q |
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| T |
40722975 |
cacaaatacataagatacctttcaactaattgagtcaacacat---tcataaaagagacagtaacctttgtttatcttggtcaaaaaccattttcaagac |
40722879 |
T |
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| Q |
111 |
caattagnnnnnnnnc---ataaaagattgggtattaagtgaatgaacattttattatagatttgtaaactaaacgcgtcattatttctaaaagttacgt |
207 |
Q |
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| T |
40722878 |
cgattatatttttttttttattaaagattgggtattaagtgaatgaacattttattatatatttgtaaattaaaagcgtcattatttctaaaagttacgt |
40722779 |
T |
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| Q |
208 |
tcaaaattcttttgtgtaaatcttaaaaag |
237 |
Q |
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| T |
40722778 |
tcaaaattcttttgtgtaaatctcaaaaag |
40722749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 409
Target Start/End: Complemental strand, 40722729 - 40722637
Alignment:
| Q |
317 |
atcacttatacaataaattcgcaattaggttaccattttcatctatttctcttttttaacggcaaaagcattgaattaaaaacaagagtttga |
409 |
Q |
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| T |
40722729 |
atcacttatatagtaaattcacaattgatttaccattttcacatatttctcttttttatgggcaaaagcattgaattaaaaacaagagtttga |
40722637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 40708284 - 40708223
Alignment:
| Q |
50 |
acatcattcatagaagagacactaacctttctttatcttggtcaaaaaccatttccaagacc |
111 |
Q |
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| T |
40708284 |
acatcattcatagaaaagacaatgacctttgtttgtcttggtcaaaaatcatttccaagacc |
40708223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 40722673 - 40722726
Alignment:
| Q |
243 |
aaaaaagagaaatacgtgaaaatgataaactaattgtaaatttactatataagt |
296 |
Q |
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| T |
40722673 |
aaaaaagagaaatatgtgaaaatggtaaatcaattgtgaatttactatataagt |
40722726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 40707346 - 40707399
Alignment:
| Q |
243 |
aaaaaagagaaatacgtgaaaatgataaactaattgtaaatttactatataagt |
296 |
Q |
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| T |
40707346 |
aaaaaagagaaatagatgaaaatggtaacctaattgcgaatttactatataagt |
40707399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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