View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13880_low_16 (Length: 422)
Name: NF13880_low_16
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 138 - 422
Target Start/End: Complemental strand, 18487235 - 18486951
Alignment:
| Q |
138 |
atgtgcaaataaattgtctcaaagcatgaaagaattgaacagaacaaagcaatgtagagatgaattatttgtttaggactcacattaattgagaaccatt |
237 |
Q |
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| T |
18487235 |
atgtgcaaataaattgtctcaaagcatgtaagaattgaacagaacaaagcaatgtagagatgaattatttgtttaggactcacattaattgagaaccatt |
18487136 |
T |
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| Q |
238 |
tacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgcaaaataatttatattggacctattggtaaatatttcttatga |
337 |
Q |
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| T |
18487135 |
tacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgcaaaatattttatattggacctattggtaaatatttcttatga |
18487036 |
T |
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| Q |
338 |
taattacagactttatttcttgtaattaaaaaatatcatgatttaattaccttggtagcatcacagacaatgagaccaccatctt |
422 |
Q |
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| T |
18487035 |
aaattacaagctttatttcttgtaattaaaaaatatcatgatttaattaccttggtagcatcacaaacaatgagaccaccatctt |
18486951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 18513542 - 18513441
Alignment:
| Q |
197 |
atgaattatttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgca |
296 |
Q |
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| T |
18513542 |
atgaattatttgtttaaaactcacattaattgagaaccattcacttgtgaaaggataacactgaaac---catcttctgtaaccttgagtaaaccctgca |
18513446 |
T |
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| Q |
297 |
aaata |
301 |
Q |
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| T |
18513445 |
aaata |
18513441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 18507101 - 18507000
Alignment:
| Q |
197 |
atgaattatttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactgaaaccttcttcttctgtaaccttgagcaaaccctgca |
296 |
Q |
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||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || |||||||||| |
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| T |
18507101 |
atgaattatttgtctaaaacttacattaattgagaaccatttacttgtgaaaggataacactgaaac---catcttctgtaacctttagtaaaccctgca |
18507005 |
T |
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| Q |
297 |
aaata |
301 |
Q |
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||||| |
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| T |
18507004 |
aaata |
18507000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 37046430 - 37046363
Alignment:
| Q |
197 |
atgaattatttgtttaggactcacattaattgagaaccatttacttgtgaaaggataacactgaaacc |
264 |
Q |
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| T |
37046430 |
atgaattatttgtttgaaactcacattaattgagaaacatttacttgggaaaggataacactgaaacc |
37046363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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