View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13880_low_17 (Length: 379)
Name: NF13880_low_17
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 18792907 - 18792546
Alignment:
| Q |
1 |
atggttatacattgaaaataattgaagactatttggtagggacacaaatatgttaaacttttaatttttcaaacattaaaatataggatgctgacataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18792907 |
atggttatacattgaaaataattgaagactatttggtagggacacaaatatgttaaacttttaatttttcaaacattaaaatataggatgcttacataga |
18792808 |
T |
|
| Q |
101 |
ggatgcaatgtattgatggtcagatatatatagacacacatacacacttatttttgtacagaaaacttaacttggtaatcaattattttcaacaactcca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18792807 |
ggatgcaatgtattgatggtcatatatatatagacacacatacacacttatttttgtacagaaaacttaacttgataatcaattattttcaacaactcca |
18792708 |
T |
|
| Q |
201 |
tcaacattatgttagccatatcccctcctttgttttcaacaattggatggccctttgaggagcctttaagccataaccagcatcagaattcattctacaa |
300 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18792707 |
tcaacattatgttagcgatatctcctcctatgttttcaacaattggatggccctttgaggagcctttaagccataaccagcatcagaattcattctacaa |
18792608 |
T |
|
| Q |
301 |
agacactgttgatcaattatttaattttcatgatcaagttgaggcagaaattaattcaacag |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18792607 |
agacactgttgatcaattatttaattttcatgatcaagttgaggcagaaattaattcaacag |
18792546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 18783252 - 18783139
Alignment:
| Q |
176 |
taatcaattattttcaacaactccatcaacattatgttagccatatcccctcctttgttttcaacaattggatggccctttgaggagcctttaagccata |
275 |
Q |
| |
|
||||||| | |||||||| || |||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
18783252 |
taatcaactgttttcaactgctacatcaacattatgttagcgatatctcctcctatgttttcaacaattggatggccctttgaagagtctttaagtcata |
18783153 |
T |
|
| Q |
276 |
accagcatcagaat |
289 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18783152 |
accagcatcagaat |
18783139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 18804263 - 18804150
Alignment:
| Q |
176 |
taatcaattattttcaacaactccatcaacattatgttagccatatcccctcctttgttttcaacaattggatggccctttgaggagcctttaagccata |
275 |
Q |
| |
|
||||||| | |||||||| ||| ||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
18804263 |
taatcaactgttttcaactactacatcatcattatgttagcgatatctcctcctatgttttcaacaattggatggccctttgaagagtctttaagtcata |
18804164 |
T |
|
| Q |
276 |
accagcatcagaat |
289 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18804163 |
accagcatcagaat |
18804150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 18783140 - 18783090
Alignment:
| Q |
312 |
atcaattatttaattttcatgatcaagttgaggcagaaattaattcaacag |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18783140 |
atcaattatttaattttcatgatcaagttgaggcagaaattaattcaacag |
18783090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 18804151 - 18804101
Alignment:
| Q |
312 |
atcaattatttaattttcatgatcaagttgaggcagaaattaattcaacag |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18804151 |
atcaattatttaattttcatgatcaagttgaggcagaaattaattcaacag |
18804101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 18804430 - 18804332
Alignment:
| Q |
10 |
cattgaaaataattgaagactat--ttggtagggacacaaatatgttaaacttttaatttttcaaacattaaaatataggatgctgacatagaggatgca |
107 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||||| || |||||| |||||||| | ||||||||||||| ||||| |||| ||| ||||| |
|
|
| T |
18804430 |
cattgaaaa-aattgaagactatattttgtagggacacaaatatatttaactttgaatttttccatcattaaaatatagtatgcttacattgagaatgca |
18804332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University