View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13880_low_18 (Length: 366)
Name: NF13880_low_18
Description: NF13880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13880_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 2812634 - 2812971
Alignment:
| Q |
10 |
acatcatcaccgcatttcagaatttagaggatcacgttggttacgtctcgactcaacctttgacggctgtttccccttactctaccatgcatgaagacat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2812634 |
acatcatcaccgcatttcagaatttagaggatcacgttggttacgtctcgactcaacctttgacggctgtttccccttactctaccatgcatgaagacat |
2812733 |
T |
|
| Q |
110 |
atgcaatttggcagaggaaaagagggtatccaccattatcagtcccttccataagcaacaaacagttgatggagaaatgcaagaaacaaaccctgcattg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2812734 |
atgcaatttggcagaggaaaagagggtatccaccatcatcattcccttccataagcaacaaacagttgatggagaaatgcaagaaacaaaccctgcattg |
2812833 |
T |
|
| Q |
210 |
agaatggtgaaccacaacttattacaaagctctccttgttcggttgggattctagtcgatagaggcctaaacggatccagccggttaactgcaagtcaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2812834 |
agaatggtgaaccacaacttattacaaagctctccttgttcggttgggattctagtcgatagaggcctaaacggatccagccggttaactgcaagtcaag |
2812933 |
T |
|
| Q |
310 |
catctcatcaggtggctgtgctattcttcggtggaccg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2812934 |
catctcatcaggtggctgtgctattcttcggtggaccg |
2812971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 39236876 - 39236758
Alignment:
| Q |
63 |
caacctttgacggctgtttccccttactctaccatgcatgaagacatatgcaatttggcagaggaaaagagggtatccaccattatcagtcccttccata |
162 |
Q |
| |
|
||||||||||| || | |||||||||||||| ||||||||||| ||||||| ||| || || |||||| | || || || |||| || || |||| |
|
|
| T |
39236876 |
caacctttgactgcaatctccccttactctacaatgcatgaagatatatgcactttagccgaagaaaagcgtgtcgcctttataatcatcccttttcata |
39236777 |
T |
|
| Q |
163 |
agcaacaaacagttgatgg |
181 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39236776 |
agcaacaaacagttgatgg |
39236758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University